Gordonia phage Volt
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Detailed Information for Phage Volt
Discovery Information
Isolation HostGordonia terrae 3612
Found ByOlivia Bartholomew
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.44268 N, 79.956251 W Map
Discovery NotesThe soil sample was collected at 11:59 AM on 09/04/2017 one of the flower beds on the towers patio on the Forbes Avenue side. The soil is very rich and moist. The soil itself is dark brown and is very fine. The temperature outside is 77 degrees and it is sunny outside. The sample was transported in a bag for one hour and then was placed in a refrigerator overnight.
Naming NotesI chose the name Volt for my phage, because it is strong and powerful name. Phages are strong and powerful so I thought the name was appropriate.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 19, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1302
Genome length (bp)68553
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceACTCTGCCCAT
GC Content50.2%
Sequencing Notes40% of the population contains a 118 bp deletion of 32984 - 33101 bp
Fasta file available?Yes: Download fasta file
Characterization
ClusterDP
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes150
Number of tRNAs2
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Volt_1

Volt_2

Volt_3

Volt_4

Volt_5

Volt_6

Volt_7

Volt_8

Volt_9

Volt_10

Volt_11

Volt_12

Volt_13

Volt_14

Volt_15

Volt_16

Volt_17

Volt_18

Volt_19

Volt_20

Volt_21

Volt_22

Volt_23

Volt_24

Volt_25

Volt_26

Volt_27

Volt_28

Volt_29
(Lsr2-like DNA bridging protein)

Volt_30
(serine hydrolase)

Volt_31

Volt_32

Volt_33

Volt_34

Volt_35

Volt_36
(terminase)

Volt_37
(portal protein)

Volt_38
(MuF-like minor capsid protein)

Volt_39

Volt_40
(scaffolding protein)

Volt_41
(major capsid protein)

Volt_42
(head-to-tail adaptor)

Volt_43

Volt_44

Volt_45

Volt_46
(tail terminator)

Volt_47
(major tail protein)

Volt_48
(tail assembly chaperone)

Volt_49
(tail assembly chaperone)

Volt_50
(AAA-ATPase)

Volt_51

Volt_52

Volt_53
(tape measure protein)

Volt_54
(minor tail protein)

Volt_55
(minor tail protein)

Volt_56

Volt_57
(minor tail protein)

Volt_58

Volt_59

Volt_60

Volt_61

Volt_62

Volt_63
(lysin A)

Volt_64

Volt_65

Volt_66

Volt_67
(Lsr2-like DNA bridging protein)

Volt_68

Volt_69

Volt_70

Volt_71

Volt_72

Volt_73

Volt_74

Volt_75

Volt_76

Volt_77

Volt_78

Volt_79

Volt_80

Volt_81

Volt_82

Volt_83

Volt_84

Volt_85

Volt_86
(Cas4 family exonuclease)

Volt_87

Volt_88

Volt_89

Volt_90

Volt_91

Volt_92

Volt_93

Volt_94

Volt_95
(WhiB family transcription factor)

Volt_96

Volt_97
(WhiB family transcription factor)

Volt_98

Volt_99
(HNH endonuclease)

Volt_100

Volt_101

Volt_102

Volt_103

Volt_104

Volt_105
(DNA primase/helicase)

Volt_106
(ssDNA binding protein)

Volt_107

Volt_108

Volt_109

Volt_110

Volt_111
(endonuclease VII)

Volt_112

Volt_113

Volt_114

Volt_115
(ERF family ssDNA binding protein)

Volt_116

Volt_117

Volt_118

Volt_119
(helix-turn-helix DNA-binding protein)

Volt_120

Volt_121
(NrdH-like glutaredoxin)

Volt_122

Volt_123
(exonuclease)

Volt_124

Volt_125
(glycosyltransferase)

Volt_126

Volt_127

Volt_128

Volt_129 — tRNA
(tRNA-Asn(gtt))

Volt_130 — tRNA
(tRNA-Leu(tag))

Volt_131

Volt_132

Volt_133

Volt_134

Volt_135

Volt_136

Volt_137

Volt_138

Volt_139

Volt_140

Volt_141

Volt_142
(glycosyltransferase)

Volt_143

Volt_144

Volt_145

Volt_146

Volt_147

Volt_148

Volt_149

Volt_150
(HNH endonuclease)

Volt_151

Volt_152

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN813698
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 58
Pitt Freezer Box Grid# B12
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload