Gordonia phage Confidence
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Detailed Information for Phage Confidence
Discovery Information
Isolation HostGordonia terrae 3612
Found ByGwenyth Ballard, Kongmeng Lo, Christopher Rost
Year Found2016
Location FoundRiver Falls, WI, WI United States
Finding InstitutionUniversity of Wisconsin-River Falls
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature29°C
GPS Coordinates44.852 N, 92.621 W Map
Discovery NotesThe soil was under a tent in wet conditions for over a week before it was collected as a sample. The Siphoviradae tail for the phage was quite long. Kong and Chris isolated the phage from Gwenyth's soil sample.
Naming NotesThroughout the whole experience, we experience a lot of trial and error. Although, we had a lot of experimental error and re-trials, we never lost any confidence; thus, this was where the name was found.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 15, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage194
Genome length (bp)50646
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGTATGGCAT
GC Content66.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCY
SubclusterCY1
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesSmall and Clear. No halos were present.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Confidence_1
(terminase small subunit)

Confidence_2
(terminase large subunit)

Confidence_3
(portal protein)

Confidence_4
(capsid maturation protease)

Confidence_5
(scaffolding protein)

Confidence_6
(capsid decoration protein)

Confidence_7
(major capsid protein)

Confidence_8

Confidence_9
(head-to-tail connector complex protein)

Confidence_10
(head-to-tail connector complex protein)

Confidence_11

Confidence_12

Confidence_13
(head-to-tail connector complex protein)

Confidence_14
(major tail protein)

Confidence_15
(tail assembly chaperone)

Confidence_16
(tail assembly chaperone)

Confidence_17

Confidence_18
(tape measure protein)

Confidence_19
(minor tail protein)

Confidence_20
(minor tail protein)

Confidence_21

Confidence_22
(lysin A)

Confidence_23

Confidence_24
(membrane protein)

Confidence_25
(membrane protein)

Confidence_26
(lysin B)

Confidence_27

Confidence_28

Confidence_29

Confidence_30

Confidence_31

Confidence_32

Confidence_33

Confidence_34

Confidence_35

Confidence_36
(integrase)

Confidence_37
(integrase)

Confidence_38
(HicB-like antitoxin)

Confidence_39
(HicA-like toxin)

Confidence_40

Confidence_41

Confidence_42
(immunity repressor)

Confidence_43
(HTH DNA binding protein)

Confidence_44

Confidence_45
(antirepressor)

Confidence_46

Confidence_47

Confidence_48

Confidence_49

Confidence_50

Confidence_51

Confidence_52

Confidence_53

Confidence_54

Confidence_55

Confidence_56

Confidence_57
(exonuclease)

Confidence_58
(ssDNA binding protein)

Confidence_59

Confidence_60

Confidence_61

Confidence_62
(nucleotidyltransferase)

Confidence_63

Confidence_64
(HTH DNA binding protein)

Confidence_65

Confidence_66

Confidence_67

Confidence_68

Confidence_69

Confidence_70

Confidence_71

Confidence_72

Confidence_73
(resolvase)

Confidence_74

Confidence_75

Confidence_76

Confidence_77

Confidence_78

Confidence_79

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMG872834
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 2.185x10^7
Date of SEA Lysate Titering Oct 17, 2016
Pitt Freezer Box# 37
Pitt Freezer Box Grid# E8
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload