Gordonia phage Kudefre
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Kudefre
Discovery Information
Isolation HostGordonia terrae 3612
Found ByRaelys L. DeLeon-Fernandez
Year Found2019
Location FoundSan Juan, PR USA
Finding InstitutionUniversity of Puerto Rico at Cayey
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates18.3458 N, 66.0979 W Map
Discovery NotesSoil was humid.
Naming NotesKudelfre just came from my imagination.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 5, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage585
Genome length (bp)76731
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceATCTGCGCCCC
GC Content58.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDU
SubclusterDU1
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionUniversity of Puerto Rico at Cayey
Annotation StatusIn GenBank
Plaque NotesClear plaques
Has been Phamerated?Yes
Gene List

Click to View

Kudefre_1

Kudefre_2

Kudefre_3

Kudefre_4

Kudefre_5
(helix-turn-helix DNA binding domain protein)

Kudefre_6
(tyrosine integrase)

Kudefre_7

Kudefre_8

Kudefre_9

Kudefre_10

Kudefre_11
(terminase small subunit)

Kudefre_12
(terminase large subunit)

Kudefre_13
(portal protein)

Kudefre_14

Kudefre_15
(scaffolding protein)

Kudefre_16
(major capsid protein)

Kudefre_17
(head-to-tail adaptor)

Kudefre_18
(head-to-tail stopper)

Kudefre_19

Kudefre_20
(tail terminator)

Kudefre_21
(major tail protein)

Kudefre_22
(tail assembly chaperone)

Kudefre_23
(tail assembly chaperone)

Kudefre_24

Kudefre_25
(tape measure protein)

Kudefre_26
(minor tail protein)

Kudefre_27
(minor tail protein)

Kudefre_28

Kudefre_29
(minor tail protein)

Kudefre_30

Kudefre_31
(minor tail protein)

Kudefre_32

Kudefre_33
(lysin A, protease C39 domain)

Kudefre_34
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Kudefre_35

Kudefre_36

Kudefre_37
(Lsr2-like DNA bridging protein)

Kudefre_38

Kudefre_39

Kudefre_40

Kudefre_41
(immunity repressor)

Kudefre_42
(helix-turn-helix DNA binding domain protein)

Kudefre_43

Kudefre_44

Kudefre_45

Kudefre_46

Kudefre_47

Kudefre_48

Kudefre_49

Kudefre_50

Kudefre_51

Kudefre_52

Kudefre_53
(band-7-like membrane protein)

Kudefre_54
(MazG-like nucleotide pyrophosphohydrolase)

Kudefre_55

Kudefre_56

Kudefre_57

Kudefre_58
(Cas4 family exonuclease)

Kudefre_59

Kudefre_60
(ERF family ssDNA binding protein)

Kudefre_61

Kudefre_62

Kudefre_63

Kudefre_64

Kudefre_65

Kudefre_66
(WhiB family transcription factor)

Kudefre_67
(WhiB family transcription factor)

Kudefre_68
(helix-turn-helix DNA binding domain protein)

Kudefre_69

Kudefre_70

Kudefre_71

Kudefre_72

Kudefre_73

Kudefre_74

Kudefre_75

Kudefre_76

Kudefre_77

Kudefre_78

Kudefre_79
(DnaB-like dsDNA helicase)

Kudefre_80

Kudefre_81
(ssDNA binding protein)

Kudefre_82

Kudefre_83

Kudefre_84

Kudefre_85
(RusA-like resolvase)

Kudefre_86

Kudefre_87

Kudefre_88
(polynucleotide kinase)

Kudefre_89

Kudefre_90
(RNA ligase)

Kudefre_91

Kudefre_92
(pyrophosphate kinase)

Kudefre_93
(nicotinate ribosyltransferase)

Kudefre_94

Kudefre_95
(nucleotidyltransferase)

Kudefre_96

Kudefre_102

Kudefre_103

Kudefre_104

Kudefre_105

Kudefre_107

Kudefre_108

Kudefre_109
(ThyX-like thymidylate synthase)

Kudefre_110

Kudefre_111

Kudefre_112

Kudefre_113
(ribonucleotide reductase)

Kudefre_114
(NrdH-like glutaredoxin)

Kudefre_115

Kudefre_116
(MRE11 double-strand break endo/exonuclease)

Kudefre_117

Kudefre_118

Kudefre_119

Kudefre_120
(lysin B)

Kudefre_121

Kudefre_122
(AAA-ATPase)

Kudefre_123
(glycosyltransferase)

Kudefre_124

Kudefre_125
(glycosyltransferase)

Kudefre_126
(glycosyltransferase)

Kudefre_127

Kudefre_128
(HNH endonuclease)

Kudefre_129

Kudefre_130

Kudefre_131

Kudefre_132

Kudefre_133

Kudefre_134
(helix-turn-helix DNA binding domain protein)

Kudefre_135

Kudefre_136

Kudefre_137

Kudefre_138

Kudefre_139

Kudefre_140

Kudefre_141

Kudefre_142

Kudefre_143
(AAA-ATPase)

Kudefre_144

Kudefre_145

Kudefre_146

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOK040786
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
GenBank File for PhameratorDownload