Gordonia phage Neville
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Detailed Information for Phage Neville
Discovery Information
Isolation HostGordonia terrae 3612
Found ByLauren Andrews and Emma Bragdon
Year Found2017
Location FoundWestford, MA United States
Finding InstitutionUniversity of Maine, Honors College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates42.582525 N, 71.485782 W Map
Discovery NotesSoil sample taken from a garden/pumpkin patch.
Naming NotesWe both like Harry Potter, and Neville Longbottom loves plants. This phage was discovered in a pumpkin patch so we thought why not name it Neville.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 6, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage405
Genome length (bp)75813
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceATCTGCCCCAC
GC Content58.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDU
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members

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Annotation StatusIn GenBank
Plaque NotesThe plaques are turbid with a diameter of 2-3mm.
Has been Phamerated?Yes
Gene List

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Neville_1
(membrane protein)

Neville_2
(membrane protein)

Neville_3

Neville_4

Neville_5

Neville_6

Neville_7

Neville_8
(integrase, (Y-int))

Neville_9

Neville_10

Neville_11
(terminase. small subunit)

Neville_12
(terminase, large subunit)

Neville_13
(portal protein)

Neville_14
(capsid maturation protease)

Neville_15
(scaffolding protein)

Neville_16
(major capsid protein)

Neville_17
(head-to-tail connector complex protein)

Neville_18
(head-to-tail connector complex protein)

Neville_19

Neville_20
(head-to-tail connector complex protein)

Neville_21
(major tail protein)

Neville_22

Neville_23
(tail assembly chaperone)

Neville_24
(tail assembly chaperone)

Neville_25

Neville_26
(tape measure protein)

Neville_27
(minor tail protein)

Neville_28
(minor tail protein)

Neville_29
(minor tail protein)

Neville_30
(minor tail protein)

Neville_31

Neville_32
(minor tail protein)

Neville_33

Neville_34
(lysin A, cysteine protease domain)

Neville_35
(lysin A, peptidoglycan binding domain)

Neville_36
(holin)

Neville_37
(membrane protein)

Neville_38
(Lsr2-like DNA bridging protein)

Neville_39
(membrane protein)

Neville_40
(immunity repressor)

Neville_41
(Cro (control of repressor's operator))

Neville_42
(excise)

Neville_43

Neville_44

Neville_45

Neville_46

Neville_47
(membrane protein)

Neville_48
(phosphoribosyl transferase)

Neville_49

Neville_50

Neville_51

Neville_52

Neville_53

Neville_54

Neville_55
(MazG-like nucleotide pyrophosphohydrolase)

Neville_56
(membrane protein)

Neville_57

Neville_58
(exonuclease)

Neville_59

Neville_60
(ssDNA binding protein, ERF family)

Neville_61

Neville_62
(WhiB family transcription factor)

Neville_63
(WhiB family transcription factor)

Neville_64

Neville_65

Neville_66
(DNA methylase)

Neville_67

Neville_68

Neville_69

Neville_70

Neville_71
(DnaB dsDNA helicase)

Neville_72
(ssDNA binding protein)

Neville_73

Neville_74

Neville_75
(DNA methylase)

Neville_76
(RusA resolvase (endonuclease))

Neville_77

Neville_78
(polynucleotide kinase)

Neville_79

Neville_80
(RNA ligase)

Neville_81
(phosphoribosylpyrophosphate synthetase)

Neville_82
(nicotinate phosphoribsoyl transferase)

Neville_83

Neville_84

Neville_85
(nucleotidyl transferase)

Neville_86

Neville_87

Neville_88

Neville_89

Neville_90

Neville_91
(Ro-like RNA binding protein)

Neville_92
(membrane protein)

Neville_93
(DNA primase/polymerase)

Neville_99

Neville_100

Neville_101
(membrane protein)

Neville_102
(membrane protein)

Neville_105

Neville_106
(ThyX thymidylate synthase)

Neville_107

Neville_108

Neville_109

Neville_110
(ribonucleotide reductase)

Neville_111
(NrdH glutaredoxin)

Neville_112

Neville_113
(exonuclease)

Neville_114

Neville_115
(lysin B)

Neville_116

Neville_117

Neville_118
(AAA-ATPase)

Neville_119
(HNH endoncuclease)

Neville_120
(glycosyltransferase)

Neville_121

Neville_122
(glycosyltransferase)

Neville_123

Neville_124
(glycosyltransferase)

Neville_125
(HNH endonuclease)

Neville_126

Neville_127

Neville_128

Neville_129

Neville_130

Neville_131
(membrane protein)

Neville_132
(helix-turn-helix DNA binding domain)

Neville_133

Neville_134

Neville_135

Neville_136

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH651182
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 73
Pitt Freezer Box Grid# B6
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload