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Gordonia phage Schiebs
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Detailed Information for Phage Schiebs
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByJohnathon Schiebel
Year Found2016
Location FoundCabot, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates40.79814 N, 79.761075 W Map
Discovery NotesThe phage soil sample was collected from 210 Star Grill Rd. in Cabot PA. Soil originated from a compost pile and was collected on March 26, 2016 at 2:50pm. Weather was cloudy and 62 degrees Fahrenheit. It had rained the day before. Soil was from about 2 inches deep in the compost pile and was moist and dark brown in color. Some plant vegetation was visible in the sample.
Naming NotesMy nickname
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJul 28, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage3688
Genome length (bp)14646
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCCCGCGCCCA
GC Content70.6%
Sequencing Notesat position 9395 bp approximately 20% of reads contain an A instead of consensus C
at positions 12636-12637 bp or at positions 12638-12639 bp approximately 30% of reads contain a TG deletion
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Other Cluster Members
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload