Arthrobacter phage Amavida
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Detailed Information for Phage Amavida
Discovery Information
Isolation HostArthrobacter sp. ATCC 21022
Duplicates of this PhageBlueBell, Enderman
Found ByVerssally Aracena, Micaela Espinoza
Year Found2022
Location FoundHackensack, NJ United Stated
Finding InstitutionMontclair State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature26°C
GPS Coordinates40.86745 N, 74.17596 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 17, 2023
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage889
Genome length (bp)58907
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length1583 bp
GC Content53.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterAQ
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionMontclair State University
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes89
Number of tRNAs6
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Amavida_1

Amavida_2

Amavida_3

Amavida_4

Amavida_5

Amavida_6

Amavida_7

Amavida_8

Amavida_9

Amavida_10

Amavida_11

Amavida_12

Amavida_13

Amavida_14 — tRNA
(tRNA-Gln(ctg))

Amavida_15 — tRNA
(tRNA-Tyr(gta))

Amavida_16 — tRNA
(tRNA-Trp(cca))

Amavida_17 — tRNA
(tRNA-Pro(tgg))

Amavida_18

Amavida_19

Amavida_20
(minor tail protein)

Amavida_21
(minor tail protein)

Amavida_22

Amavida_23

Amavida_24
(terminase)

Amavida_25
(portal protein)

Amavida_26
(capsid maturation protease)

Amavida_27

Amavida_28
(major capsid protein)

Amavida_29

Amavida_30

Amavida_31

Amavida_32

Amavida_33
(tail terminator)

Amavida_34

Amavida_35
(major tail protein)

Amavida_36
(major tail protein)

Amavida_37
(tail assembly chaperone)

Amavida_38
(tail assembly chaperone)

Amavida_39
(tape measure protein)

Amavida_40
(minor tail protein)

Amavida_41
(minor tail protein)

Amavida_42

Amavida_43

Amavida_44

Amavida_45
(endolysin)

Amavida_46
(holin)

Amavida_47

Amavida_48

Amavida_49
(DnaQ-like DNA polymerase III subunit)

Amavida_50

Amavida_51

Amavida_52

Amavida_53

Amavida_54
(RuvC-like resolvase)

Amavida_55

Amavida_56
(DNA polymerase I)

Amavida_57
(helix-turn-helix DNA binding protein)

Amavida_58
(DNA primase)

Amavida_59 — tRNA
(tRNA-Val(gac))

Amavida_60 — tRNA
(tRNA-?(Trp|Leu)(ca))

Amavida_61

Amavida_62
(RecA-like DNA recombinase)

Amavida_63
(Cas4 exonuclease)

Amavida_64
(WhiB family transcription factor)

Amavida_65

Amavida_66
(polynucleotide kinase)

Amavida_67
(RNA ligase)

Amavida_68

Amavida_69

Amavida_70

Amavida_71

Amavida_72
(DNA helicase)

Amavida_73

Amavida_74

Amavida_75

Amavida_76

Amavida_77
(DNA methyltransferase)

Amavida_78
(MazG-like nucleotide pyrophosphohydrolase)

Amavida_79

Amavida_80

Amavida_81

Amavida_82

Amavida_83

Amavida_84

Amavida_85

Amavida_86

Amavida_87

Amavida_88

Amavida_89

Amavida_90

Amavida_91

Amavida_92

Amavida_93

Amavida_94

Amavida_95

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPQ244017
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 164
Pitt Freezer Box Grid# B2
Available Files
Restriction Digest PictureDownload
GenBank File for PhameratorDownload