Gordonia phage Boopy
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Boopy
Discovery Information
Isolation HostGordonia terrae 3612
Found ByEmma D'Alonzo
Year Found2018
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.446 N, 79.9531 W Map
Discovery NotesThe soil was collected while it was raining outside. ​​
Soil was very wet and easy to scoop.
Soil is dark brown and contains some small rocks and grass.
​Sample was taken right near a stone wall.
Sample was taken right near a generally busy sidewalk.
Sample was collected when it was 62 degrees Fahrenheit outside.
Sample was collected at coordinates 40.4460 N, -79.9531 W.
Sample was collected at 11:54 AM.
Sample will be held in a backpack in an air-conditioned building for about 35 minutes until lab class starts.
Naming NotesThis is what I call my boyfriend and he made me name my phage this.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 4, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage40
Genome length (bp)114220
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length1568 bp
GC Content53.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDS
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesPlaques are very small, about 0.5mm in diameter. They are clear throughout.
MorphotypeSiphoviridae
Number of Genes165
Number of tRNAs29
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

Click to View

Boopy_1

Boopy_2

Boopy_3

Boopy_4
(G-I-Y Y-I-G endonuclease)

Boopy_5

Boopy_6

Boopy_7

Boopy_8

Boopy_9

Boopy_10

Boopy_11

Boopy_12

Boopy_13

Boopy_14

Boopy_15

Boopy_16

Boopy_17

Boopy_18

Boopy_19

Boopy_20

Boopy_21

Boopy_22

Boopy_23

Boopy_24

Boopy_25

Boopy_26

Boopy_27

Boopy_28

Boopy_29

Boopy_30

Boopy_31

Boopy_32

Boopy_33

Boopy_34

Boopy_35

Boopy_36
(LamD-like)

Boopy_37

Boopy_38

Boopy_39

Boopy_40

Boopy_41

Boopy_42

Boopy_43

Boopy_44

Boopy_45

Boopy_46

Boopy_47

Boopy_48

Boopy_49

Boopy_50

Boopy_51

Boopy_52

Boopy_53

Boopy_54

Boopy_55

Boopy_56

Boopy_57

Boopy_58

Boopy_59
(polynucleotide kinase)

Boopy_60

Boopy_61

Boopy_62
(ADP-ribosylglycohydrolase)

Boopy_63

Boopy_64

Boopy_65

Boopy_66

Boopy_67

Boopy_68

Boopy_69
(terminase)

Boopy_70

Boopy_71

Boopy_72

Boopy_73
(HNH endonuclease)

Boopy_74
(WhiB family transcription factor)

Boopy_75
(MuF-like minor capsid protein)

Boopy_76

Boopy_77
(portal protein)

Boopy_78

Boopy_79

Boopy_80
(ADP-ribosyltransferase)

Boopy_81

Boopy_82

Boopy_83

Boopy_84

Boopy_85

Boopy_86

Boopy_87
(major capsid hexamer protein)

Boopy_88

Boopy_89

Boopy_90

Boopy_91
(head-to-tail adaptor)

Boopy_92

Boopy_93
(glycosyltransferase)

Boopy_94
(n-acetylglucosaminyltransferase)

Boopy_95

Boopy_96

Boopy_97

Boopy_98

Boopy_99
(tape measure protein)

Boopy_100
(minor tail protein)

Boopy_101
(minor tail protein)

Boopy_102

Boopy_103

Boopy_104
(minor tail protein)

Boopy_105

Boopy_106

Boopy_107

Boopy_108
(lysin A, protease C39 domain)

Boopy_109
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Boopy_110

Boopy_111

Boopy_112

Boopy_113

Boopy_114

Boopy_115

Boopy_116

Boopy_117
(AAA-ATPase)

Boopy_118

Boopy_119
(AAA-ATPase)

Boopy_120
(WhiB family transcription factor)

Boopy_121

Boopy_122
(methyltransferase)

Boopy_123

Boopy_124
(MazG-like nucleotide pyrophosphohydrolase)

Boopy_125
(band-7-like membrane protein)

Boopy_126

Boopy_127
(glycosyltransferase)

Boopy_128

Boopy_129
(LamD-like)

Boopy_130

Boopy_131

Boopy_132 — tRNA
(codon recognized: UUC)

Boopy_133 — tRNA
(codon recognized: AGA)

Boopy_134 — tRNA
(codon recognized: ACA)

Boopy_135 — tRNA
(codon recognized: GUA)

Boopy_136 — tRNA
(codon recognized: GGA)

Boopy_137 — tRNA
(codon recognized: GAA)

Boopy_138 — tRNA
(codon recognized: AAA)

Boopy_139 — tRNA
(codon recognized: AAG)

Boopy_140 — tRNA
(codon recognized: UGC)

Boopy_141 — tRNA
(codon recognized: UCA)

Boopy_142 — tRNA
(codon recognized: CAC)

Boopy_143 — tRNA
(codon recognized: UUG)

Boopy_144 — tRNA
(codon recognized: CAA)

Boopy_145

Boopy_146 — tRNA
(codon recognized: UGG)

Boopy_147 — tRNA
(codon recognized: UUA)

Boopy_148 — tRNA
(codon recognized: GAG)

Boopy_149 — tRNA
(codon recognized: CUA)

Boopy_150 — tRNA
(codon recognized: GAC)

Boopy_151 — tRNA
(codon recognized: GCA)

Boopy_153 — tRNA
(codon recognized: UAC)

Boopy_154 — tRNA
(codon recognized: CCA)

Boopy_155 — tRNA
(codon recognized: AUC)

Boopy_156 — tRNA
(codon recognized: AUG)

Boopy_157 — tRNA
(codon recognized: AUA)

Boopy_158 — tRNA
(codon recognized: CUC)

Boopy_159 — tRNA
(codon recognized: CAG)

Boopy_160 — tRNA
(codon recognized: AUC)

Boopy_161 — tRNA
(codon recognized: CGU)

Boopy_162 — tmRNA

Boopy_163 — tRNA
(codon recognized: AAC)

Boopy_164
(Ro-like RNA binding protein)

Boopy_165

Boopy_166
(RecA-like DNA recombinase)

Boopy_167
(Cas4 family exonuclease)

Boopy_168

Boopy_169
(DNA helicase)

Boopy_170

Boopy_171

Boopy_172

Boopy_173
(DNA polymerase I)

Boopy_174

Boopy_175
(deoxycytidylate deaminase)

Boopy_176

Boopy_177

Boopy_178
(thymidylate synthase)

Boopy_179
(thymidylate kinase)

Boopy_180

Boopy_181
(lysin B)

Boopy_182

Boopy_183

Boopy_184

Boopy_185

Boopy_186

Boopy_187

Boopy_188

Boopy_189

Boopy_190
(DNA primase/polymerase)

Boopy_191
(MerR-like helix-turn-helix DNA binding domain protein)

Boopy_192

Boopy_193

Boopy_194

Boopy_195

Boopy_196

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK894436
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 2x10^10
Pitt Freezer Box# 89
Pitt Freezer Box Grid# G9
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload