Arthrobacter phage Circum
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Detailed Information for Phage Circum
Discovery Information
Isolation HostArthrobacter sp. ATCC 21022
Found ByQuynh Vo
Year Found2013
Location FoundDenton, TX USA
Finding InstitutionUniversity of North Texas
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates33.212622 N, 97.14895 W Map
Discovery NotesThe sample was taken at night on 8-27-13 and soil conditions were moist at the time of collection. The soil type was top soil.
Naming NotesNamed for its unsually and annoyingly small size.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 6, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage5127
Genome length (bp)58353
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCCGGCCT
GC Content45.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterAM
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesPlaques are small, clear. Average diameter is around 0.3 mm.
MorphotypeSiphoviridae
Number of Genes99
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Circum_1

Circum_2

Circum_3

Circum_4
(HNH endonuclease)

Circum_5
(endolysin)

Circum_6

Circum_7

Circum_8
(terminase)

Circum_9

Circum_10
(portal protein)

Circum_11

Circum_12
(major capsid and protease fusion protein)

Circum_13

Circum_14

Circum_15
(major tail protein)

Circum_16

Circum_17
(major tail protein)

Circum_18
(minor tail protein)

Circum_19
(minor tail protein)

Circum_20

Circum_21

Circum_22
(tape measure protein)

Circum_23
(minor tail protein)

Circum_24
(minor tail protein)

Circum_25

Circum_26

Circum_27

Circum_28

Circum_29

Circum_30

Circum_31

Circum_32

Circum_33

Circum_34

Circum_35

Circum_36

Circum_37

Circum_38

Circum_39

Circum_40

Circum_41
(acetyltransferase)

Circum_42

Circum_43

Circum_44

Circum_45

Circum_46

Circum_47
(helix-turn-helix DNA-binding domain protein)

Circum_48

Circum_49

Circum_50

Circum_51

Circum_52

Circum_53

Circum_54

Circum_55

Circum_56

Circum_57

Circum_58

Circum_59

Circum_60

Circum_61

Circum_62

Circum_63
(DNA primase/polymerase)

Circum_64

Circum_65

Circum_66

Circum_67

Circum_68

Circum_69

Circum_70

Circum_71

Circum_72

Circum_73

Circum_74

Circum_75

Circum_76

Circum_77

Circum_78
(HNH endonuclease)

Circum_79

Circum_80
(DNA helicase)

Circum_81

Circum_82

Circum_83

Circum_84
(HNH endonuclease)

Circum_85

Circum_86
(thymidylate synthase)

Circum_87

Circum_88

Circum_89

Circum_90

Circum_91

Circum_92
(DprA-like DNA processing chain A)

Circum_93
(PnuC-like nicotinamide riboside transporter)

Circum_94

Circum_95

Circum_96
(VRR-Nuc domain protein)

Circum_97
(exonuclease)

Circum_98
(helix-turn-helix DNA-binding domain protein)

Circum_99

Submitted Annotation in DNA Master FormatDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKU160642
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 147
Pitt Freezer Box Grid# F11
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Virtual Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload