Gordonia phage Daredevil
Daredevil Plaque Picture
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Detailed Information for Phage Daredevil
Discovery Information
Isolation HostGordonia terrae 3612
Former namesAragorn
Found ByElizabeth Crinzi
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.439444 N, 79.954167 W Map
Discovery NotesThis phage was found in a soil sample collected at Posvar Hall in Pittsburgh, PA on January 8th, 2017 at 3:49 PM EST. The temperature at the time of collection was 16 degrees Fahrenheit, the humidity was 47%, and the weather was cloudy with a 12 mph wind. The day's high temperature 17 degrees Fahrenheit and the low was 8 degrees Fahrenheit. The soil sample was stored in a cool, dark drawer at room temperature for approximately 20 hours before being used in lab. The sample was then directly isolated and incubated for approximately 30 degrees Celsius for three days
Naming NotesI named this phage Daredevil after one of my favorite superheroes and tv shows.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 15, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage680
Genome length (bp)90490
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCAACGCTC
GC Content64.8%
Sequencing Notesat position 46745 bp approximately 28% of reads contain a C instead of consensus G
Fasta file available?Yes: Download fasta file
Characterization
ClusterDL
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesPlaques are about 1.7 mm in diameter. The plaques are clear.
MorphotypeSiphoviridae
Number of Genes165
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Daredevil_1

Daredevil_2

Daredevil_3

Daredevil_4
(thymidylate synthase)

Daredevil_5

Daredevil_6

Daredevil_7

Daredevil_8

Daredevil_9

Daredevil_10
(HNH endonuclease)

Daredevil_11

Daredevil_12
(terminase)

Daredevil_13
(portal protein)

Daredevil_14
(MuF-like minor capsid protein)

Daredevil_15

Daredevil_16
(capsid decoration protein)

Daredevil_17
(major capsid protein)

Daredevil_18

Daredevil_19

Daredevil_20

Daredevil_21

Daredevil_22
(tail terminator)

Daredevil_23
(major tail protein)

Daredevil_24

Daredevil_25
(tail assembly chaperone)

Daredevil_26
(tail assembly chaperone)

Daredevil_27
(tape measure protein)

Daredevil_28
(minor tail protein)

Daredevil_29
(minor tail protein)

Daredevil_30
(lysin A, protease C39 domain)

Daredevil_31
(lysin A, L-Ala-D-Glu peptidase domain)

Daredevil_32

Daredevil_33

Daredevil_34

Daredevil_35
(minor tail protein)

Daredevil_36
(minor tail protein)

Daredevil_37

Daredevil_38

Daredevil_39

Daredevil_40

Daredevil_41

Daredevil_42

Daredevil_43

Daredevil_44

Daredevil_45

Daredevil_46

Daredevil_47

Daredevil_48

Daredevil_49

Daredevil_50

Daredevil_51
(HNH endonuclease)

Daredevil_52

Daredevil_53

Daredevil_54
(tyrosine integrase)

Daredevil_55

Daredevil_56
(immunity repressor)

Daredevil_57

Daredevil_58

Daredevil_59

Daredevil_60

Daredevil_61

Daredevil_62

Daredevil_63

Daredevil_64

Daredevil_65

Daredevil_66

Daredevil_67

Daredevil_68

Daredevil_69
(WhiB family transcription factor)

Daredevil_70

Daredevil_71

Daredevil_72

Daredevil_73

Daredevil_74
(ssDNA binding protein)

Daredevil_75
(NrdH-like glutaredoxin)

Daredevil_76
(DNA primase/helicase)

Daredevil_77

Daredevil_78

Daredevil_79
(antirepressor)

Daredevil_80

Daredevil_81

Daredevil_82

Daredevil_83
(excise)

Daredevil_84
(RecT-like DNA pairing protein)

Daredevil_85
(RecE-like exonuclease)

Daredevil_86

Daredevil_87

Daredevil_88

Daredevil_89
(tRNA nucleotidyltransferase)

Daredevil_90
(RNA ligase)

Daredevil_91
(HNH endonuclease)

Daredevil_92

Daredevil_93

Daredevil_94

Daredevil_95

Daredevil_96

Daredevil_97

Daredevil_98

Daredevil_99

Daredevil_100

Daredevil_101

Daredevil_102

Daredevil_103

Daredevil_104
(HNH endonuclease)

Daredevil_105

Daredevil_106

Daredevil_107

Daredevil_108
(polynucleotide kinase)

Daredevil_109

Daredevil_110

Daredevil_111

Daredevil_112
(5' nucleotidase)

Daredevil_113

Daredevil_114

Daredevil_115

Daredevil_116

Daredevil_117

Daredevil_118

Daredevil_119

Daredevil_120

Daredevil_121

Daredevil_122

Daredevil_123
(lysin B)

Daredevil_124

Daredevil_125

Daredevil_126
(antitoxin)

Daredevil_127
(toxin)

Daredevil_128

Daredevil_129

Daredevil_130

Daredevil_131

Daredevil_132

Daredevil_133

Daredevil_134

Daredevil_135

Daredevil_136

Daredevil_137

Daredevil_138

Daredevil_139

Daredevil_140

Daredevil_141

Daredevil_142

Daredevil_143

Daredevil_144

Daredevil_145

Daredevil_146

Daredevil_147

Daredevil_148

Daredevil_149

Daredevil_150

Daredevil_151

Daredevil_152

Daredevil_153

Daredevil_154

Daredevil_155

Daredevil_156

Daredevil_157

Daredevil_158
(ArdA-like antirestriction protein)

Daredevil_159

Daredevil_160

Daredevil_161

Daredevil_162

Daredevil_163

Daredevil_164

Daredevil_165

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH590603
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 55
Pitt Freezer Box Grid# E7
Available Files
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload