| Detailed Information for Phage Ding | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Found By | Scarlett Tong |
| Year Found | 2024 |
| Location Found | Daly City, CA United States |
| Finding Institution | Skyline College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | 30°C |
| GPS Coordinates | 37.654194 N, 122.458639 W Map |
| Discovery Notes | Group (Scarlett T, Erica S, Catelyn S, Zoie W), Instructors (Rocky Ng, Michael Diaz, Nick Kapp), TAs (Kane Y, Diego A). The plaque was found from soil hidden under a bush. The soil was a bit moist and compacted. |
| Naming Notes | We combined the names of our instructors, Diaz and Ng. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jun 4, 2025 |
| Sequencing Facility | NC State Genomic Sciences Laboratory |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina NovaSeq X Plus |
| Read Type | Paired-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 72406 |
| Genome length (bp) | 52648 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | CGCCGGTGA |
| GC Content | 62.4% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AY |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
Click to ViewAbbyDaisy AdaS Aikyam Anekin Auxilium BenchScraper Bhageatrice BillyTP BlueShadow CookieBear Ding EvePickles Faja Globfish Gorpy Hestia Hillester Isolde JellyBread Lawnathon MaterMagnus MidnightRain MUWow Persistence Phrank15 RadFad Raphaella Raqqa Richie Sakai Sashimi Seahorse Shukran SpicyFrank ThayneTheZag Tiff81 Vopal Windest YoungHarleezy |
| Annotating Institution | Skyline College |
| Annotation Status | Being Annotated (Expected completion by 12/4/2025) |
| Plaque Notes | Titer: 1.496 x 10^9 PFU/mL 2mm diameter, little turbid |
| Morphotype | Siphoviridae |
| Number of Genes | 97 |
| Number of tRNAs | 1 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewDing_1 Ding_2 Ding_3 Ding_4 Ding_5 Ding_6 Ding_7 Ding_8 Ding_9 Ding_10 Ding_11 Ding_12 Ding_13 Ding_14 Ding_15 Ding_16 Ding_17 Ding_18 Ding_19 Ding_20 Ding_21 Ding_22 Ding_23 Ding_24 Ding_25 Ding_26 Ding_27 Ding_28 Ding_29 Ding_30 Ding_31 Ding_32 Ding_33 — tRNA Ding_34 Ding_35 Ding_36 Ding_37 Ding_38 Ding_39 Ding_40 Ding_41 Ding_42 Ding_43 Ding_44 Ding_45 Ding_46 Ding_47 Ding_48 Ding_49 Ding_50 Ding_51 Ding_52 Ding_53 Ding_54 Ding_55 Ding_56 Ding_57 Ding_58 Ding_59 Ding_60 Ding_61 Ding_62 Ding_63 Ding_64 Ding_65 Ding_66 Ding_67 Ding_68 Ding_69 Ding_70 Ding_71 Ding_72 Ding_73 Ding_74 Ding_75 Ding_76 Ding_77 Ding_78 Ding_79 Ding_80 Ding_81 Ding_82 Ding_83 Ding_84 Ding_85 Ding_86 Ding_87 Ding_88 Ding_89 Ding_90 Ding_91 Ding_92 Ding_93 Ding_94 Ding_95 Ding_96 Ding_97 Ding_98 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
