| Detailed Information for Phage Raqqa | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Former names | Douma |
| Found By | Amjad Alghamyan |
| Year Found | 2023 |
| Location Found | Ottawa, Canada |
| Finding Institution | University of Ottawa |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 16°C |
| GPS Coordinates | 45.424722 N, 75.684667 W Map |
| Discovery Notes | A 7 mL soil sample was collected from a raised garden bed in St. Joe's Women's Center's Community garden. The garden bed contained a variety of plants including tomatoes. The sample was taken from the level of 3-7 cm below the surface. The soil was moist and dark. |
| Naming Notes | Raqqa is a beautiful city in Syria. The city was destroyed in the last 10 years, so I chose this name to memorialize this city and its people. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 8, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 537 |
| Genome length (bp) | 54146 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | TCCGGCAAT |
| GC Content | 62.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AY |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | University of Ottawa |
| Annotation Status | Overdue (Expected completion by 8/31/2024) |
| Plaque Notes | The plaques were consistently: circular, clear, well-defined edges, with no turbid center/bull's eye. Variation in size (very small to small) was observed but was attributed to short incubation time. |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewRaqqa_Draft_1 Raqqa_Draft_2 Raqqa_Draft_3 Raqqa_Draft_4 Raqqa_Draft_5 Raqqa_Draft_6 Raqqa_Draft_7 Raqqa_Draft_8 Raqqa_Draft_9 Raqqa_Draft_10 Raqqa_Draft_11 Raqqa_Draft_12 Raqqa_Draft_13 Raqqa_Draft_14 Raqqa_Draft_15 Raqqa_Draft_16 Raqqa_Draft_17 Raqqa_Draft_18 Raqqa_Draft_19 Raqqa_Draft_20 Raqqa_Draft_21 Raqqa_Draft_22 Raqqa_Draft_23 Raqqa_Draft_24 Raqqa_Draft_25 Raqqa_Draft_26 Raqqa_Draft_27 Raqqa_Draft_28 Raqqa_Draft_29 Raqqa_Draft_30 Raqqa_Draft_31 Raqqa_Draft_32 Raqqa_Draft_33 Raqqa_Draft_34 Raqqa_Draft_35 Raqqa_Draft_36 Raqqa_Draft_37 Raqqa_Draft_38 Raqqa_Draft_39 Raqqa_Draft_40 Raqqa_Draft_41 Raqqa_Draft_42 Raqqa_Draft_43 Raqqa_Draft_44 Raqqa_Draft_45 Raqqa_Draft_46 Raqqa_Draft_47 Raqqa_Draft_48 Raqqa_Draft_49 Raqqa_Draft_50 Raqqa_Draft_51 Raqqa_Draft_52 Raqqa_Draft_53 Raqqa_Draft_54 Raqqa_Draft_55 Raqqa_Draft_56 Raqqa_Draft_57 Raqqa_Draft_58 Raqqa_Draft_59 Raqqa_Draft_60 Raqqa_Draft_61 Raqqa_Draft_62 Raqqa_Draft_63 Raqqa_Draft_64 Raqqa_Draft_65 Raqqa_Draft_66 Raqqa_Draft_67 Raqqa_Draft_68 Raqqa_Draft_69 Raqqa_Draft_70 Raqqa_Draft_71 Raqqa_Draft_72 Raqqa_Draft_73 Raqqa_Draft_74 Raqqa_Draft_75 Raqqa_Draft_76 Raqqa_Draft_77 Raqqa_Draft_78 Raqqa_Draft_79 Raqqa_Draft_80 Raqqa_Draft_81 Raqqa_Draft_82 Raqqa_Draft_83 Raqqa_Draft_84 Raqqa_Draft_85 Raqqa_Draft_86 Raqqa_Draft_87 Raqqa_Draft_88 Raqqa_Draft_89 Raqqa_Draft_90 Raqqa_Draft_91 Raqqa_Draft_92 Raqqa_Draft_93 Raqqa_Draft_94 Raqqa_Draft_95 Raqqa_Draft_96 Raqqa_Draft_97 Raqqa_Draft_98 Raqqa_Draft_99 Raqqa_Draft_100 Raqqa_Draft_101 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 176 |
| Pitt Freezer Box Grid# | G6 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
