| Detailed Information for Phage Dori | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Erica Shepard |
| Year Found | 2008 |
| Location Found | Santa Cruz, CA USA |
| Finding Institution | University of California, Santa Cruz |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 36.991383 N, 122.060867 W Map |
| Discovery Notes | Soil type: scum off bottom of fishpond depth: 1 cm temp: 73°F/23°C environment: no/very little shade, underwater, fish present in water, near other water plants |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 11, 2011 |
| Genome length (bp) | 64613 |
| Character of genome ends | Circularly Permuted |
| GC Content | 66.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AD |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members | |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Plaques were very small at first (pinpoint). They became larger (opaque) with other possible opaque plaques in the background. Opaque plaques in the background were picked and plated. The plaques were all opaque. After the lysate was sitting around for one month it was plated and some clear pinpoint plaques appeared among other opaque plaques. |
| Morphotype | Siphoviridae |
| Number of Genes | 94 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewDori_1 Dori_2 Dori_3 Dori_4 Dori_5 Dori_6 Dori_7 Dori_8 Dori_9 Dori_10 Dori_11 Dori_12 Dori_13 Dori_14 Dori_15 Dori_16 Dori_17 Dori_18 Dori_19 Dori_20 Dori_21 Dori_22 Dori_23 Dori_24 Dori_25 Dori_26 Dori_27 Dori_28 Dori_29 Dori_30 Dori_31 Dori_32 Dori_33 Dori_34 Dori_35 Dori_36 Dori_37 Dori_38 Dori_39 Dori_40 Dori_41 Dori_42 Dori_43 Dori_44 Dori_45 Dori_46 Dori_47 Dori_48 Dori_49 Dori_50 Dori_51 Dori_52 Dori_53 Dori_54 Dori_55 Dori_56 Dori_57 Dori_58 Dori_59 Dori_60 Dori_61 Dori_62 Dori_63 Dori_64 Dori_65 Dori_66 Dori_67 Dori_68 Dori_69 Dori_70 Dori_71 Dori_72 Dori_73 Dori_74 Dori_75 Dori_76 Dori_77 Dori_78 Dori_79 Dori_80 Dori_81 Dori_82 Dori_83 Dori_84 Dori_85 Dori_86 Dori_87 Dori_88 Dori_89 Dori_90 Dori_91 Dori_92 Dori_93 Dori_94 |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | JN698995 |
| Refseq Number | NC_023703 |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info | |
| Archiving status | Archived |
| SEA Designator | 2008 Dori UCSC |
| SEA Lysate Titer | 8x10^8 |
| Pitt Freezer Box# | 1 |
| Pitt Freezer Box Grid# | F7 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |