Arthrobacter phage Edmundo
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Detailed Information for Phage Edmundo
Discovery Information
Isolation HostArthrobacter sp. ATCC 21022
Found ByCassandra Ott
Year Found2014
Location FoundPushmataha County, OK USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates34.67318 N, 95.465207 W Map
Discovery Notesunder some small vine like grass/flowering plants, on edge of small stream about 5 ft from small driveway/parking lot
Naming Notesa modification of my grandpa's name
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 16, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage2825
Sanger Finishing Reactions2
Genome length (bp)60191
Character of genome endsCircularly Permuted
GC Content64.6%
Sequencing NotesThere were a few regions of low-percentage (<30%) SNPs in the reads. Perhaps a somewhat mixed population.
Fasta file available?Yes: Download fasta file
Characterization
ClusterAL
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Number of Genes98
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Edmundo_1
(ParB-like nuclease domain protein)

Edmundo_2

Edmundo_3

Edmundo_4
(ParB-like nuclease domain protein)

Edmundo_5
(PAPs reductase)

Edmundo_6
(ParB-like nuclease domain protein)

Edmundo_7
(methyltransferase)

Edmundo_8
(terminase small subunit)

Edmundo_9
(terminase large subunit)

Edmundo_10

Edmundo_11

Edmundo_12

Edmundo_13

Edmundo_14
(ssDNA-binding protein)

Edmundo_15

Edmundo_16
(portal protein)

Edmundo_17
(MuF-like minor capsid protein)

Edmundo_18
(capsid maturation protease)

Edmundo_19
(nuclease)

Edmundo_20

Edmundo_21

Edmundo_22
(RNAse)

Edmundo_23

Edmundo_24
(RecA-like DNA recombinase)

Edmundo_25
(major capsid protein)

Edmundo_26

Edmundo_27
(minor tail protein)

Edmundo_28

Edmundo_29

Edmundo_30

Edmundo_31
(head-to-tail stopper)

Edmundo_32
(minor capsid protein)

Edmundo_33
(tail terminator)

Edmundo_34

Edmundo_35

Edmundo_36

Edmundo_37

Edmundo_38

Edmundo_39

Edmundo_40

Edmundo_41

Edmundo_42

Edmundo_43

Edmundo_44

Edmundo_45

Edmundo_46

Edmundo_47

Edmundo_48

Edmundo_49

Edmundo_50

Edmundo_51
(nucleotide pyrophosphohydrolase)

Edmundo_52

Edmundo_53

Edmundo_54

Edmundo_55

Edmundo_56

Edmundo_57

Edmundo_58

Edmundo_59

Edmundo_60

Edmundo_61

Edmundo_62

Edmundo_63

Edmundo_64
(major tail protein)

Edmundo_65
(tail assembly chaperone)

Edmundo_66
(tail assembly chaperone)

Edmundo_67
(tape measure protein)

Edmundo_68
(minor tail protein)

Edmundo_69
(minor tail protein)

Edmundo_70
(minor tail protein)

Edmundo_71

Edmundo_72

Edmundo_73

Edmundo_74

Edmundo_75

Edmundo_76

Edmundo_77

Edmundo_78

Edmundo_79

Edmundo_80

Edmundo_81
(lysin A)

Edmundo_82
(host nuclease inhibitor)

Edmundo_83
(AAA-ATPase)

Edmundo_84

Edmundo_85

Edmundo_86
(helix-turn-helix DNA binding domain protein)

Edmundo_87

Edmundo_88

Edmundo_89
(HNH endonuclease)

Edmundo_90
(RNA polymerase sigma factor)

Edmundo_91

Edmundo_92

Edmundo_93
(Cas4 family exonuclease)

Edmundo_94
(DNA helicase)

Edmundo_95

Edmundo_96
(hydrolase)

Edmundo_97
(amidoligase)

Edmundo_98
(glutamine amidotransferase domain protein)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN585972
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 4
Pitt Freezer Box Grid# B5
Available Files
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload