Detailed Information for Phage Edmundo |
Discovery Information |
Isolation Host | Arthrobacter sp. ATCC 21022 |
Found By | Cassandra Ott |
Year Found | 2014 |
Location Found | Pushmataha County, OK USA |
Finding Institution | University of Pittsburgh |
Program | Phage Hunters Integrating Research and Education |
From enriched soil sample? | Yes |
Isolation Temperature | Not entered |
GPS Coordinates | 34.67318 N, 95.465207 W Map |
Discovery Notes | under some small vine like grass/flowering plants, on edge of small stream about 5 ft from small driveway/parking lot |
Naming Notes | a modification of my grandpa's name |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Nov 16, 2015 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 2825 |
Sanger Finishing Reactions | 2 |
Genome length (bp) | 60191 |
Character of genome ends | Circularly Permuted |
GC Content | 64.6% |
Sequencing Notes | There were a few regions of low-percentage (<30%) SNPs in the reads. Perhaps a somewhat mixed population. |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | AL |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
|
Annotating Institution | University of Pittsburgh |
Annotation Status | In GenBank |
Number of Genes | 98 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MN585972 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
4 |
Pitt Freezer Box Grid# |
B5 |
Available Files |
EM Picture | Download |
Final DNAMaster File | Download |
GenBank File for Phamerator | Download |