Gordonia phage EpicDab
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| Detailed Information for Phage EpicDab | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Grace Klein |
| Year Found | 2018 |
| Location Found | Tampa, FL USA |
| Finding Institution | University of South Florida |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | 32°C |
| GPS Coordinates | 28.059444 N, 82.402778 W Map |
| Discovery Notes | Was collected from a pile of what I thought looked like compost on the sidewalk. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 21, 2019 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 3650 |
| Genome length (bp) | 16658 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 8 bases |
| Overhang Sequence | CCCGCGCC |
| GC Content | 69.1% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DM |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
Click to View |
| Annotating Institution | University of South Florida |
| Annotation Status | In GenBank |
| Plaque Notes | Lytic plaques observed. |
| Number of Genes | 24 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewEpicDab_1 EpicDab_2 EpicDab_3 EpicDab_4 EpicDab_5 EpicDab_6 EpicDab_7 EpicDab_8 EpicDab_9 EpicDab_10 EpicDab_11 EpicDab_12 EpicDab_13 EpicDab_14 EpicDab_15 EpicDab_16 EpicDab_17 EpicDab_18 EpicDab_19 EpicDab_20 EpicDab_21 EpicDab_22 EpicDab_23 EpicDab_24 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK660712 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 84 |
| Pitt Freezer Box Grid# | B6 |
| Available Files | |
| EM Picture | Download |
| GenBank File for Phamerator | Download |