| Detailed Information for Phage Jumbo | |
| Discovery Information | |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Amanda Weber |
| Year Found | 2015 |
| Location Found | Hudson, WI USA |
| Finding Institution | University of Wisconsin-River Falls |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 44.984444 N, 92.754444 W Map |
| Discovery Notes | From Compost soil. Air temp was 69*F, sunny, no wind, low humidity, semi-moist soil with small pieces of leaves and other debris, 30mm deep. |
| Naming Notes | The plaques were very small, so I named my phage Jumbo ironically. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 17, 2016 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 1323 |
| Genome length (bp) | 78302 |
| Character of genome ends | Direct Terminal Repeat |
| Direct Terminal Repeat Length | 370 bp |
| GC Content | 54.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DF |
| Subcluster | DF3 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to View |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Small, pinprick sized plaques. Clear appearance. |
| Morphotype | Siphoviridae |
| Number of Genes | 102 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewJumbo_1 Jumbo_2 Jumbo_3 Jumbo_4 Jumbo_5 Jumbo_6 Jumbo_7 Jumbo_8 Jumbo_9 Jumbo_10 Jumbo_11 Jumbo_12 Jumbo_13 Jumbo_14 Jumbo_15 Jumbo_16 Jumbo_17 Jumbo_18 Jumbo_20 Jumbo_19 Jumbo_21 Jumbo_22 Jumbo_23 Jumbo_24 Jumbo_25 Jumbo_26 Jumbo_27 Jumbo_28 Jumbo_29 Jumbo_30 Jumbo_31 Jumbo_32 Jumbo_33 Jumbo_34 Jumbo_35 Jumbo_36 Jumbo_37 Jumbo_38 Jumbo_39 Jumbo_40 Jumbo_41 Jumbo_42 Jumbo_43 Jumbo_44 Jumbo_45 Jumbo_46 Jumbo_47 Jumbo_48 Jumbo_49 Jumbo_50 Jumbo_51 Jumbo_52 Jumbo_53 Jumbo_54 Jumbo_55 Jumbo_56 Jumbo_57 Jumbo_58 Jumbo_59 Jumbo_60 Jumbo_61 Jumbo_62 Jumbo_63 Jumbo_64 Jumbo_65 Jumbo_66 Jumbo_67 Jumbo_68 Jumbo_69 Jumbo_70 Jumbo_71 Jumbo_72 Jumbo_73 Jumbo_74 Jumbo_75 Jumbo_76 Jumbo_77 Jumbo_78 Jumbo_79 Jumbo_80 Jumbo_81 Jumbo_82 Jumbo_83 Jumbo_84 Jumbo_85 Jumbo_86 Jumbo_87 Jumbo_88 Jumbo_89 Jumbo_90 Jumbo_91 Jumbo_92 Jumbo_93 Jumbo_94 Jumbo_95 Jumbo_96 Jumbo_97 Jumbo_98 Jumbo_99 Jumbo_100 Jumbo_101 Jumbo_102 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | KX557281 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 1.3216x10^8 |
| Date of SEA Lysate Titering | Oct 19, 2015 |
| Pitt Freezer Box# | 24 |
| Pitt Freezer Box Grid# | C4 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |
