| Detailed Information for Phage MalagasyRose |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Deborah Jacobs-Sera |
| Year Found | 2018 |
| Location Found | Antsirabe, Madagascar |
| Finding Institution | University of Pittsburgh |
| Program | Phage Hunters Integrating Research and Education |
| From enriched soil sample? | Yes |
| Isolation Temperature | 22°C |
| GPS Coordinates | 19.8633 S, 47.034005 E Map |
| Discovery Notes | Enriched, isolated, purified, and amplified at room temperature. Does not make appreciable plaques at 37C. |
| Naming Notes | The sample was taken from the dirt around a Rosebush. Malagasy was added to the name as coming from "Madagascar". |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jul 19, 2018 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 51 |
| Genome length (bp) | 54301 |
| Character of genome ends | 3' Sticky Overhang |
| End Determination Notes | The left end is quite clear from sequencing read buildup, but the right end is not. As of now, therefore, the exact length of the 3' overhang is not known. |
| GC Content | 65.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | AG |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
|
| Annotating Institution | University of Pittsburgh |
| Annotation Status | In GenBank |
| Morphotype | Siphoviridae |
| Number of Genes | 84 |
| Number of tRNAs | 2 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MN234170 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
8 |
| Pitt Freezer Box Grid# |
C6 |
| Available Files |
| Plaque Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |
