Mycobacterium phage MalagasyRose
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage MalagasyRose
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByDeborah Jacobs-Sera
Year Found2018
Location FoundAntsirabe, Madagascar
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation Temperature22°C
GPS Coordinates19.8633 S, 47.034005 E Map
Discovery NotesEnriched, isolated, purified, and amplified at room temperature.
Naming NotesThe sample was taken from the dirt around a Rosebush. Malagasy was added to the name as coming from "Madagascar".
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJul 19, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage51
Genome length (bp)54301
Character of genome ends3' Sticky Overhang
End Determination NotesThe left end is quite clear from sequencing read buildup, but the right end is not. As of now, therefore, the exact length of the 3' overhang is not known.
GC Content65.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

MalagasyRose_1

MalagasyRose_4

MalagasyRose_5

MalagasyRose_6
(terminase, small subunit)

MalagasyRose_7
(terminase, large subunit)

MalagasyRose_8
(portal protein)

MalagasyRose_9
(capsid maturation protease and MuF-like fusion protein)

MalagasyRose_10
(scaffolding protein)

MalagasyRose_11
(major capsid protein)

MalagasyRose_12

MalagasyRose_13

MalagasyRose_14

MalagasyRose_15
(head-to-tail adaptor)

MalagasyRose_16
(head-to-tail stopper)

MalagasyRose_17

MalagasyRose_18
(tail terminator)

MalagasyRose_19
(major tail protein)

MalagasyRose_20
(tail assembly chaperone)

MalagasyRose_21
(tail assembly chaperone)

MalagasyRose_22
(tape measure protein)

MalagasyRose_23
(minor tail protein)

MalagasyRose_24
(minor tail protein)

MalagasyRose_25
(minor tail protein)

MalagasyRose_26
(minor tail protein)

MalagasyRose_27
(minor tail protein)

MalagasyRose_28

MalagasyRose_29

MalagasyRose_30
(lysin A)

MalagasyRose_31
(lysin B)

MalagasyRose_32
(holin)

MalagasyRose_33

MalagasyRose_34

MalagasyRose_35
(nuclease)

MalagasyRose_36

MalagasyRose_37

MalagasyRose_38
(helix-turn-helix DNA binding domain)

MalagasyRose_39

MalagasyRose_40

MalagasyRose_41
(intergrase (S-Int))

MalagasyRose_42

MalagasyRose_43
(membrane protein)

MalagasyRose_44

MalagasyRose_45
(helix-turn-helix DNA bindng protein)

MalagasyRose_46

MalagasyRose_47

MalagasyRose_48

MalagasyRose_49

MalagasyRose_50

MalagasyRose_51
(helix-turn-helix DNA binding domain)

MalagasyRose_52

MalagasyRose_53

MalagasyRose_54

MalagasyRose_55

MalagasyRose_56

MalagasyRose_57

MalagasyRose_58
(DNA polymerase III)

MalagasyRose_59

MalagasyRose_60

MalagasyRose_61
(Cas4 family exonuclease)

MalagasyRose_62

MalagasyRose_63

MalagasyRose_64

MalagasyRose_65
(helix-turn-helix DNA binding protein)

MalagasyRose_66

MalagasyRose_67

MalagasyRose_68
(HNH endonuclease)

MalagasyRose_69
(DNA primase)

MalagasyRose_70
(RusA-like resolvase (endonuclease))

MalagasyRose_71
(helix-turn-helix DNA binding domain)

MalagasyRose_72

MalagasyRose_73

MalagasyRose_74

MalagasyRose_75

MalagasyRose_76
(helix-turn-helix DNA binding domain; membrane protein)

MalagasyRose_77

MalagasyRose_78

MalagasyRose_79

MalagasyRose_80

MalagasyRose_81

MalagasyRose_82

MalagasyRose_83

MalagasyRose_84

MalagasyRose_85
(HNH endonuclease)

MalagasyRose_86

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN234170
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 8
Pitt Freezer Box Grid# C6
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload