The Actinobacteriophage Database

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Detailed Information for Phage PSonyx
Discovery Information
Isolation Host	Corynebacterium glutamicum MB001
Found By	Anastassiya Litvinov
Year Found	2022
Location Found	Massy, France
Finding Institution	University Paris-Saclay
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	30°C
GPS Coordinates	48.72538 N, 2.27359 E Map
Discovery Notes	Phage was found from a pond where "bacterial blooms" were observed following a long drought.
Naming Notes	The phage is called after the initials of our university (Paris-Saclay) and the name Onyx.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jan 10, 2023
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Sequencer Used	Illumina MiSeq
Read Type	Single-end reads
Read Length	150 bp
Approximate Shotgun Coverage	791
Genome length (bp)	80277
Character of genome ends	Circularly Permuted
GC Content	53.0%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	EQ
Subcluster	--
Cluster Life Cycle	Unknown
Other Cluster Members	Click to View MicyPS PSonyx
Annotating Institution	University Paris-Saclay
Annotation Status	In GenBank
Plaque Notes	Clear with irregular edges, 1.5 mm large
Morphotype	Siphoviridae
Number of Genes	136
Number of tRNAs	5
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View PSonyx_1 (helix-turn-helix DNA binding domain protein) PSonyx_2 (terminase) PSonyx_3 (portal protein) PSonyx_4 (minor capsid protein) PSonyx_5 (scaffolding protein) PSonyx_6 (major capsid protein) PSonyx_7 PSonyx_8 (head-to-tail adaptor) PSonyx_9 (head-to-tail stopper) PSonyx_10 PSonyx_11 (tail terminator) PSonyx_12 (major tail protein) PSonyx_13 (tail assembly chaperone) PSonyx_14 (tail assembly chaperone) PSonyx_15 (tape measure protein) PSonyx_16 (minor tail protein) PSonyx_17 (minor tail protein) PSonyx_18 PSonyx_19 (minor tail protein) PSonyx_20 (minor tail protein) PSonyx_21 (tail fiber) PSonyx_22 PSonyx_23 (minor tail protein) PSonyx_24 (minor tail protein) PSonyx_25 PSonyx_26 (endolysin) PSonyx_27 (holin) PSonyx_28 PSonyx_29 PSonyx_30 PSonyx_31 PSonyx_32 PSonyx_33 PSonyx_34 PSonyx_35 PSonyx_36 PSonyx_37 (DnaQ-like DNA polymerase III subunit) PSonyx_38 PSonyx_39 PSonyx_40 PSonyx_41 PSonyx_42 PSonyx_43 PSonyx_44 PSonyx_45 PSonyx_46 PSonyx_47 PSonyx_48 PSonyx_49 PSonyx_50 PSonyx_51 PSonyx_52 PSonyx_53 (methyltransferase) PSonyx_54 PSonyx_55 PSonyx_56 PSonyx_57 PSonyx_58 PSonyx_59 PSonyx_60 PSonyx_61 PSonyx_62 PSonyx_63 PSonyx_64 PSonyx_65 PSonyx_66 PSonyx_67 PSonyx_68 PSonyx_69 PSonyx_70 PSonyx_71 PSonyx_72 PSonyx_73 PSonyx_74 PSonyx_75 PSonyx_76 PSonyx_77 PSonyx_78 (HNH endonuclease) PSonyx_79 (helix-turn-helix DNA binding domain protein) PSonyx_80 PSonyx_81 PSonyx_82 PSonyx_83 PSonyx_84 PSonyx_85 PSonyx_86 (antirepressor) PSonyx_87 PSonyx_88 PSonyx_89 (DNA binding protein) PSonyx_90 (AAA-ATPase) PSonyx_91 (RtcB-like RNA ligase) PSonyx_92 PSonyx_93 PSonyx_94 (band-7-like membrane protein) PSonyx_95 PSonyx_96 (SSB protein) PSonyx_97 PSonyx_98 (RecT-like DNA pairing protein) PSonyx_99 (exonuclease) PSonyx_100 — tRNA (tRNA-Trp(cca)) PSonyx_101 — tRNA (tRNA-Ala(cgc)) PSonyx_102 — tRNA (tRNA-Arg(tct)) PSonyx_103 — tRNA (tRNA-Lys(ttt)) PSonyx_104 — tRNA (tRNA-Gln(ttg)) PSonyx_105 (deoxyuridine triphosphatase) PSonyx_106 PSonyx_107 PSonyx_108 PSonyx_109 PSonyx_110 (AAA-ATPase) PSonyx_111 (helix-turn-helix DNA binding protein) PSonyx_112 PSonyx_113 PSonyx_114 PSonyx_115 PSonyx_116 PSonyx_117 PSonyx_118 (DNA binding protein) PSonyx_119 PSonyx_120 PSonyx_121 PSonyx_122 PSonyx_123 (helix-turn-helix DNA binding domain protein) PSonyx_124 PSonyx_125 PSonyx_126 (RuvC-like resolvase) PSonyx_127 PSonyx_128 PSonyx_129 PSonyx_130 PSonyx_131 (thymidylate kinase) PSonyx_132 PSonyx_133 (HNH endonuclease) PSonyx_134 PSonyx_135 PSonyx_136 PSonyx_137 PSonyx_138 PSonyx_139 PSonyx_140 PSonyx_141
Submitted Annotation in DNA Master Format	Download
Submitted Minimal DNA Master File	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	OR521085
Refseq Number	None yet
Published in Paper	Rossier et al 2024, Microbiology Resource Announcements: Genome sequence of PSonyx, a singleton bacteriophage infecting Corynebacterium glutamicum
Archiving Info
Archiving status	Not in Pitt Archives
Available Files
Plaque Picture	Download
EM Picture	Download
GenBank File for Phamerator	Download

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