| Detailed Information for Phage Raqqa | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Former names | Douma |
| Found By | Amjad Alghamyan |
| Year Found | 2023 |
| Location Found | Ottawa, Canada |
| Finding Institution | University of Ottawa |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 16°C |
| GPS Coordinates | 45.424722 N, 75.684667 W Map |
| Discovery Notes | A 7 mL soil sample was collected from a raised garden bed in St. Joe's Women's Center's Community garden. The garden bed contained a variety of plants including tomatoes. The sample was taken from the level of 3-7 cm below the surface. The soil was moist and dark. |
| Naming Notes | Raqqa is a beautiful city in Syria. The city was destroyed in the last 10 years, so I chose this name to memorialize this city and its people. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 8, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 537 |
| Genome length (bp) | 54146 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | TCCGGCAAT |
| GC Content | 62.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AY |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members | |
| Annotating Institution | University of Ottawa |
| Annotation Status | Overdue (Expected completion by 8/31/2024) |
| Plaque Notes | The plaques were consistently: circular, clear, well-defined edges, with no turbid center/bull's eye. Variation in size (very small to small) was observed but was attributed to short incubation time. |
| Number of Genes | 101 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewRaqqa_1 Raqqa_2 Raqqa_3 Raqqa_4 Raqqa_5 Raqqa_6 Raqqa_7 Raqqa_8 Raqqa_9 Raqqa_10 Raqqa_11 Raqqa_12 Raqqa_13 Raqqa_14 Raqqa_15 Raqqa_16 Raqqa_17 Raqqa_18 Raqqa_19 Raqqa_20 Raqqa_21 Raqqa_22 Raqqa_23 Raqqa_24 Raqqa_25 Raqqa_26 Raqqa_27 Raqqa_28 Raqqa_29 Raqqa_30 Raqqa_31 Raqqa_32 Raqqa_33 Raqqa_34 Raqqa_35 Raqqa_36 Raqqa_37 Raqqa_38 Raqqa_39 Raqqa_40 Raqqa_41 Raqqa_42 Raqqa_43 Raqqa_44 Raqqa_45 Raqqa_46 Raqqa_47 Raqqa_48 Raqqa_49 Raqqa_50 Raqqa_51 Raqqa_52 Raqqa_53 Raqqa_54 Raqqa_55 Raqqa_56 Raqqa_57 Raqqa_58 Raqqa_59 Raqqa_60 Raqqa_61 Raqqa_62 Raqqa_63 Raqqa_64 Raqqa_65 Raqqa_66 Raqqa_67 Raqqa_68 Raqqa_69 Raqqa_70 Raqqa_71 Raqqa_72 Raqqa_73 Raqqa_74 Raqqa_75 Raqqa_76 Raqqa_77 Raqqa_78 Raqqa_79 Raqqa_80 Raqqa_81 Raqqa_82 Raqqa_83 Raqqa_84 Raqqa_85 Raqqa_86 Raqqa_87 Raqqa_88 Raqqa_89 Raqqa_90 Raqqa_91 Raqqa_92 Raqqa_93 Raqqa_94 Raqqa_95 Raqqa_96 Raqqa_97 Raqqa_98 Raqqa_99 Raqqa_100 Raqqa_101 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 176 |
| Pitt Freezer Box Grid# | G6 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
