| Detailed Information for Phage Raqqa | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Former names | Douma |
| Found By | Amjad Alghamyan |
| Year Found | 2023 |
| Location Found | Ottawa, Canada |
| Finding Institution | University of Ottawa |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 16°C |
| GPS Coordinates | 45.424722 N, 75.684667 W Map |
| Discovery Notes | A 7 mL soil sample was collected from a raised garden bed in St. Joe's Women's Center's Community garden. The garden bed contained a variety of plants including tomatoes. The sample was taken from the level of 3-7 cm below the surface. The soil was moist and dark. |
| Naming Notes | Raqqa is a beautiful city in Syria. The city was destroyed in the last 10 years, so I chose this name to memorialize this city and its people. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 8, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 537 |
| Genome length (bp) | 54146 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | TCCGGCAAT |
| GC Content | 62.7% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | AY |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
Click to ViewAbbyDaisy AdaS Aikyam Anekin Auxilium BenchScraper Bhageatrice BillyTP BlueShadow CookieBear EvePickles Faja Globfish Gorpy Hestia Hillester Isolde Lawnathon MaterMagnus MidnightRain Persistence Phrank15 RadFad Raphaella Raqqa Richie Sakai Sashimi Seahorse Shukran SpicyFrank ThayneTheZag Tiff81 Vopal Windest YoungHarleezy |
| Annotating Institution | University of Ottawa |
| Annotation Status | Overdue (Expected completion by 8/31/2024) |
| Plaque Notes | The plaques were consistently: circular, clear, well-defined edges, with no turbid center/bull's eye. Variation in size (very small to small) was observed but was attributed to short incubation time. |
| Number of Genes | 101 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewRaqqa_1 Raqqa_2 Raqqa_3 Raqqa_4 Raqqa_5 Raqqa_6 Raqqa_7 Raqqa_8 Raqqa_9 Raqqa_10 Raqqa_11 Raqqa_12 Raqqa_13 Raqqa_14 Raqqa_15 Raqqa_16 Raqqa_17 Raqqa_18 Raqqa_19 Raqqa_20 Raqqa_21 Raqqa_22 Raqqa_23 Raqqa_24 Raqqa_25 Raqqa_26 Raqqa_27 Raqqa_28 Raqqa_29 Raqqa_30 Raqqa_31 Raqqa_32 Raqqa_33 Raqqa_34 Raqqa_35 Raqqa_36 Raqqa_37 Raqqa_38 Raqqa_39 Raqqa_40 Raqqa_41 Raqqa_42 Raqqa_43 Raqqa_44 Raqqa_45 Raqqa_46 Raqqa_47 Raqqa_48 Raqqa_49 Raqqa_50 Raqqa_51 Raqqa_52 Raqqa_53 Raqqa_54 Raqqa_55 Raqqa_56 Raqqa_57 Raqqa_58 Raqqa_59 Raqqa_60 Raqqa_61 Raqqa_62 Raqqa_63 Raqqa_64 Raqqa_65 Raqqa_66 Raqqa_67 Raqqa_68 Raqqa_69 Raqqa_70 Raqqa_71 Raqqa_72 Raqqa_73 Raqqa_74 Raqqa_75 Raqqa_76 Raqqa_77 Raqqa_78 Raqqa_79 Raqqa_80 Raqqa_81 Raqqa_82 Raqqa_83 Raqqa_84 Raqqa_85 Raqqa_86 Raqqa_87 Raqqa_88 Raqqa_89 Raqqa_90 Raqqa_91 Raqqa_92 Raqqa_93 Raqqa_94 Raqqa_95 Raqqa_96 Raqqa_97 Raqqa_98 Raqqa_99 Raqqa_100 Raqqa_101 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 176 |
| Pitt Freezer Box Grid# | G6 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
