Arthrobacter phage Richie
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Detailed Information for Phage Richie
Discovery Information
Isolation HostArthrobacter globiformis B-2979
Duplicates of this PhageEthan, Hyacinth
Found ByMegan Ulbrich
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.491389 N, 80.158889 W Map
Discovery NotesSoil was fine and very dry.
Naming NotesThis phage is named Richie after my amazing father Richard.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 1, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Genome length (bp)53867
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang Sequence53867
GC Content62.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterAY
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesPlaques are clear and range from <1mm to 3mm.
MorphotypeSiphoviridae
Number of Genes98
Number of tRNAs1
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Richie_1
(terminase small subunit)

Richie_2
(terminase large subunit, ATPase domain)

Richie_3
(terminase large subunit, nuclease domain)

Richie_4
(portal protein)

Richie_5
(capsid maturation protease)

Richie_6
(scaffolding protein)

Richie_7
(capsid decoration protein)

Richie_8
(major capsid protein)

Richie_9

Richie_10
(head-to-tail adaptor)

Richie_11
(head-to-tail stopper)

Richie_12

Richie_13
(tail terminator)

Richie_14

Richie_15
(major tail protein)

Richie_16
(tail assembly chaperone)

Richie_17
(tail assembly chaperone)

Richie_18

Richie_19
(tape measure protein)

Richie_20
(minor tail protein)

Richie_21
(minor tail protein)

Richie_22
(minor tail protein)

Richie_23
(minor tail protein)

Richie_24

Richie_25

Richie_26

Richie_27
(lysin A)

Richie_28

Richie_29

Richie_30

Richie_31

Richie_32
(lipase)

Richie_33

Richie_34
(esterase)

Richie_35

Richie_36
(integrase)

Richie_37

Richie_38

Richie_39
(helix-turn-helix DNA-binding domain protein)

Richie_40
(integrase)

Richie_41

Richie_42

Richie_43

Richie_44

Richie_45

Richie_46

Richie_47

Richie_48

Richie_49

Richie_50

Richie_51

Richie_52
(histidine triad nucleotide binding protein)

Richie_53
(helix-turn-helix DNA-binding domain protein)

Richie_54
(helix-turn-helix DNA-binding domain protein)

Richie_55
(helix-turn-helix DNA-binding domain protein)

Richie_56
(excise)

Richie_57

Richie_58

Richie_59

Richie_60

Richie_61

Richie_62

Richie_63

Richie_64

Richie_65

Richie_66

Richie_67

Richie_68

Richie_69

Richie_70

Richie_71
(exonuclease)

Richie_72

Richie_73

Richie_74
(ssDNA-binding protein)

Richie_75

Richie_76
(glutaredoxin)

Richie_77

Richie_78
(DNA helicase/methylase)

Richie_79
(helix-turn-helix DNA-binding domain protein)

Richie_80
(DNA polymerase III beta subunit)

Richie_81

Richie_82
(DNA methylase)

Richie_83
(DNA binding domain protein)

Richie_84

Richie_85

Richie_86

Richie_87
(MazG-like nucleotide pyrophosphohydrolase)

Richie_88

Richie_89
(RusA-like resolvase)

Richie_90

Richie_91

Richie_92

Richie_93

Richie_94

Richie_95 — tRNA
(tRNA-Trp(cca))

Richie_96
(HNH endonuclease)

Richie_97

Richie_98

Richie_99
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH834625
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 6
Pitt Freezer Box Grid# G9
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload