Arthrobacter phage Shepard
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Detailed Information for Phage Shepard
Discovery Information
Isolation HostArthrobacter globiformis B-2979
Found ByPatrick Rimple
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates40.4466 N, 79.9531 W Map
Discovery NotesIsolated from a direct plate
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 31, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Genome length (bp)57272
Character of genome endsUnknown
Overhang Length9 bases
Overhang SequenceCGCCGGCCC
GC Content50.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterAU
SubclusterAU2
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque Notesplaque size 1-3 mm, clear
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Shepard_1

Shepard_2
(HNH endonuclease)

Shepard_3
(lysin A)

Shepard_4
(membrane protein)

Shepard_5

Shepard_6

Shepard_7
(terminase)

Shepard_8

Shepard_9
(membrane protein)

Shepard_10
(acetyltransferase)

Shepard_11

Shepard_12
(portal protein)

Shepard_13

Shepard_14
(major capsid and protease fusion protein)

Shepard_15

Shepard_16
(tail terminator)

Shepard_17
(major tail protein)

Shepard_18

Shepard_19
(minor tail protein)

Shepard_20

Shepard_21

Shepard_22
(minor tail protein)

Shepard_23
(minor tail protein)

Shepard_24

Shepard_25

Shepard_26

Shepard_27
(tape measure protein)

Shepard_28
(minor tail protein)

Shepard_29
(minor tail protein)

Shepard_30

Shepard_31
(minor tail protein)

Shepard_32
(membrane protein)

Shepard_33

Shepard_34
(membrane protein)

Shepard_35

Shepard_36

Shepard_37

Shepard_38

Shepard_39
(membrane protein)

Shepard_40
(membrane protein)

Shepard_41
(membrane protein)

Shepard_42

Shepard_43

Shepard_44
(membrane protein)

Shepard_45

Shepard_46

Shepard_47

Shepard_48

Shepard_49

Shepard_50
(membrane protein)

Shepard_51

Shepard_52

Shepard_53

Shepard_54

Shepard_55

Shepard_56

Shepard_57

Shepard_58

Shepard_59
(DNA primase/polymerase)

Shepard_60

Shepard_61

Shepard_62

Shepard_63

Shepard_64

Shepard_65

Shepard_66

Shepard_67

Shepard_68

Shepard_69
(membrane protein)

Shepard_70
(membrane protein)

Shepard_71

Shepard_72

Shepard_73

Shepard_74
(homing endonuclease)

Shepard_75

Shepard_76

Shepard_77

Shepard_78
(ATP-dependent helicase)

Shepard_79

Shepard_80

Shepard_81

Shepard_82

Shepard_83

Shepard_84

Shepard_85

Shepard_86

Shepard_87
(membrane protein)

Shepard_88

Shepard_89
(nuclease)

Shepard_90
(Cas4 family exonuclease)

Shepard_91
(helix-turn-helix DNA binding protein)

Shepard_92

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN234221
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 6
Pitt Freezer Box Grid# C1
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload