Arthrobacter phage Giantsbane
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Detailed Information for Phage Giantsbane
Discovery Information
Isolation HostArthrobacter globiformis B-2979
Found ByAndy (Anya) Alag
Year Found2019
Location FoundLos Angeles, CA United States
Finding InstitutionUniversity of California, Los Angeles
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature25°C
GPS Coordinates34.065562 N, 118.441146 W Map
Discovery NotesArthrobacter phage Giantsbane was isolated from soil by direct plating at 25°C. The sample was collected by Anya Alag in Los Angeles, CA next to a tree, about 50m from a stream. Giantsbane was isolated, characterized, and annotated by Pei Ying (Alex) Chen, Christopher Liu, Preston Dang, Michael Zhang, Heather A. Angel, Abbas Hakim, and Derek Q. Lam.

Instructor: Amanda Freise
Teaching Assistants: Ryan Ngo, Andrew Kapinos
Undergraduate Assistants: Yvette Lakkis, Andrew Lee
Naming NotesWe like Game of Thrones
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 21, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2197
Genome length (bp)56734
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCCGGCCT
GC Content50.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterAU
SubclusterAU2
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of California, Los Angeles
Annotation StatusQC Complete
Plaque NotesClear, turbid, or bullseye plaques.
Average diameter: 0.5-1 mm
MorphotypeSiphoviridae
Number of Genes94
Has been Phamerated?Yes
Gene List

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Giantsbane_1

Giantsbane_2
(HNH endonuclease)

Giantsbane_3
(lysin A)

Giantsbane_4
(membrane protein)

Giantsbane_5
(head-to-tail adaptor)

Giantsbane_6

Giantsbane_7
(terminase)

Giantsbane_8

Giantsbane_9
(membrane protein)

Giantsbane_10
(acetyltransferase)

Giantsbane_11
(membrane protein)

Giantsbane_12

Giantsbane_13
(portal protein)

Giantsbane_14

Giantsbane_15
(major capsid and protease fusion protein)

Giantsbane_16

Giantsbane_17
(tail terminator)

Giantsbane_18
(major tail protein)

Giantsbane_19

Giantsbane_20

Giantsbane_21
(minor tail protein)

Giantsbane_22

Giantsbane_23
(major tail protein)

Giantsbane_24

Giantsbane_25

Giantsbane_26
(minor tail protein)

Giantsbane_27
(tape measure protein)

Giantsbane_28
(minor tail protein)

Giantsbane_29
(minor tail protein)

Giantsbane_30

Giantsbane_31
(minor tail protein)

Giantsbane_32
(membrane protein)

Giantsbane_33
(membrane protein)

Giantsbane_34
(membrane protein)

Giantsbane_35
(membrane protein)

Giantsbane_36

Giantsbane_37
(membrane protein)

Giantsbane_38

Giantsbane_39

Giantsbane_40

Giantsbane_41

Giantsbane_42
(membrane protein)

Giantsbane_43

Giantsbane_44

Giantsbane_45
(membrane protein)

Giantsbane_46

Giantsbane_47

Giantsbane_48

Giantsbane_49
(membrane protein)

Giantsbane_50

Giantsbane_51

Giantsbane_52

Giantsbane_53

Giantsbane_54

Giantsbane_55

Giantsbane_56

Giantsbane_57
(membrane protein)

Giantsbane_58

Giantsbane_59
(DNA primase/polymerase)

Giantsbane_60

Giantsbane_61

Giantsbane_62

Giantsbane_63

Giantsbane_64

Giantsbane_65

Giantsbane_66

Giantsbane_67

Giantsbane_68
(membrane protein)

Giantsbane_69

Giantsbane_70

Giantsbane_71

Giantsbane_72

Giantsbane_73
(HNH endonuclease)

Giantsbane_74

Giantsbane_75

Giantsbane_76

Giantsbane_77
(DNA helicase)

Giantsbane_78

Giantsbane_79

Giantsbane_80
(HNH endonuclease)

Giantsbane_81
(HNH endonuclease)

Giantsbane_82
(membrane protein)

Giantsbane_83

Giantsbane_84
(helix-turn-helix DNA binding domain)

Giantsbane_85

Giantsbane_86

Giantsbane_87

Giantsbane_88

Giantsbane_89
(membrane protein)

Giantsbane_90

Giantsbane_91
(nuclease)

Giantsbane_92
(Cas4 family exonuclease)

Giantsbane_93
(helix-turn-helix DNA binding domain)

Giantsbane_94

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload