| Detailed Information for Phage Soos | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Bryce Kunard and Anna Wheeler |
| Year Found | 2022 |
| Location Found | New Albany, IN United States |
| Finding Institution | Indiana University-Southeast |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 26°C |
| GPS Coordinates | 38.34446 N, 85.81798 W Map |
| Discovery Notes | The weather was 61°F, sunny but chilly, some clouds. conditions; under a rock on campus, moist and damp, containing worms, and very clumpy on (9/14/22). This sample was adopted from Yucita De La Paz. |
| Naming Notes | A show I recently watched and loved was Gravity Falls. We had to come up with a unique name for our phage so I thought about Soos because I felt that was a name that not many people had chosen and it was easy to remember because of how much I loved that show. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 4, 2023 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 39 |
| Genome length (bp) | 57509 |
| Character of genome ends | Circularly Permuted |
| GC Content | 65.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CP |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members | |
| Annotating Institution | Indiana University-Southeast |
| Annotation Status | In GenBank |
| Plaque Notes | Round, relatively small, cloudy on some and clear on others. On different plates, the plaques were ranging from being close to each other than others were far apart. Some plaques were difficult to see and really had to be looked at in the light to see if there were any plaques. Plaque diameter is 1 mm. Plaques were clear and circular with cloudy halos. |
| Morphotype | Siphoviridae |
| Number of Genes | 87 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewSoos_1 Soos_2 Soos_3 Soos_4 Soos_5 Soos_6 Soos_7 Soos_8 Soos_9 Soos_10 Soos_11 Soos_12 Soos_13 Soos_14 Soos_15 Soos_16 Soos_17 Soos_18 Soos_19 Soos_20 Soos_21 Soos_22 Soos_23 Soos_24 Soos_25 Soos_26 Soos_27 Soos_28 Soos_29 Soos_30 Soos_31 Soos_32 Soos_33 Soos_34 Soos_35 Soos_36 Soos_37 Soos_38 Soos_39 Soos_40 Soos_41 Soos_42 Soos_43 Soos_44 Soos_45 Soos_46 Soos_47 Soos_48 Soos_49 Soos_50 Soos_51 Soos_52 Soos_53 Soos_54 Soos_55 Soos_56 Soos_57 Soos_58 Soos_59 Soos_60 Soos_61 Soos_62 Soos_63 Soos_64 Soos_65 Soos_66 Soos_67 Soos_68 Soos_69 Soos_70 Soos_71 Soos_72 Soos_73 Soos_74 Soos_75 Soos_76 Soos_77 Soos_78 Soos_79 Soos_80 Soos_81 Soos_82 Soos_83 Soos_84 Soos_85 Soos_86 Soos_87 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OR475291 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 156 |
| Pitt Freezer Box Grid# | H1 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |