Gordonia phage Soos
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| Detailed Information for Phage Soos | |
| Discovery Information | |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Bryce Kunard and Anna Wheeler |
| Year Found | 2022 |
| Location Found | New Albany, IN United States |
| Finding Institution | Indiana University-Southeast |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 26°C |
| GPS Coordinates | 38.34446 N, 85.81798 W Map |
| Discovery Notes | The weather was 61°F, sunny but chilly, some clouds. conditions; under a rock on campus, moist and damp, containing worms, and very clumpy on (9/14/22). This sample was adopted from Yucita De La Paz. |
| Naming Notes | A show I recently watched and loved was Gravity Falls. We had to come up with a unique name for our phage so I thought about Soos because I felt that was a name that not many people had chosen and it was easy to remember because of how much I loved that show. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 4, 2023 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 39 |
| Genome length (bp) | 57509 |
| Character of genome ends | Circularly Permuted |
| GC Content | 65.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | CP |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members | |
| Annotating Institution | Indiana University-Southeast |
| Annotation Status | In GenBank |
| Plaque Notes | Round, relatively small, cloudy on some and clear on others. On different plates, the plaques were ranging from being close to each other than others were far apart. Some plaques were difficult to see and really had to be looked at in the light to see if there were any plaques. Plaque diameter is 1 mm. Plaques were clear and circular with cloudy halos. |
| Morphotype | Siphoviridae |
| Number of Genes | 87 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List | |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OR475291 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 156 |
| Pitt Freezer Box Grid# | H1 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |