The Actinobacteriophage Database

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Detailed Information for Phage Weiss13
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Former names	MWT1013
Found By	Andy Wang
Year Found	2013
Location Found	La Jolla, CA USA
Finding Institution	University of California, San Diego
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	32.875833 N, 117.239444 W Map
Discovery Notes	Loose soil with compost on top. Plenty of plants and trees growing in area.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jan 9, 2014
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Approximate Shotgun Coverage	402
Genome length (bp)	71436
Character of genome ends	Circularly Permuted
GC Content	55.9%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	R
Subcluster	--
Cluster Life Cycle	Lytic
Other Cluster Members	Click to View Candle MontyDev Nilo Papyrus Riparian Rope Send513 Weiss13 Yelo Zenon
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Plaque Notes	Small, clear plaques with radius of about 0.1 mm
Morphotype	Siphoviridae
Number of Genes	100
Number of tRNAs	0
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Weiss13_1 Weiss13_2 Weiss13_3 Weiss13_4 Weiss13_5 (terminase) Weiss13_6 (portal protein) Weiss13_7 Weiss13_8 Weiss13_9 Weiss13_10 Weiss13_11 (metalloprotease) Weiss13_12 (MuF-like minor capsid protein) Weiss13_13 Weiss13_14 Weiss13_15 Weiss13_16 (major capsid protein) Weiss13_17 Weiss13_18 Weiss13_19 Weiss13_20 Weiss13_21 Weiss13_22 Weiss13_23 Weiss13_24 Weiss13_25 (tail assembly chaperone) Weiss13_26 (tail assembly chaperone) Weiss13_27 (tape measure protein) Weiss13_28 Weiss13_29 Weiss13_30 Weiss13_31 (minor tail protein) Weiss13_32 Weiss13_33 Weiss13_34 Weiss13_35 (lysin A) Weiss13_36 Weiss13_37 Weiss13_38 Weiss13_39 (lysin B) Weiss13_40 (NrdH-like glutaredoxin) Weiss13_41 Weiss13_42 Weiss13_43 Weiss13_44 Weiss13_45 Weiss13_46 Weiss13_47 Weiss13_48 Weiss13_49 Weiss13_50 Weiss13_51 Weiss13_52 Weiss13_53 Weiss13_54 Weiss13_55 Weiss13_56 Weiss13_57 Weiss13_58 Weiss13_59 Weiss13_60 Weiss13_61 Weiss13_62 (O-methyltransferase) Weiss13_63 Weiss13_64 Weiss13_65 Weiss13_66 (DNA helicase) Weiss13_67 Weiss13_68 Weiss13_69 Weiss13_70 (RecA-like DNA recombinase) Weiss13_71 Weiss13_72 (DNA polymerase III sliding clamp) Weiss13_73 Weiss13_74 (DnaE-like DNA polymerase III) Weiss13_75 Weiss13_76 (thimidylate synthase) Weiss13_77 Weiss13_78 (band-7-like membrane protein) Weiss13_79 Weiss13_80 Weiss13_81 Weiss13_82 Weiss13_83 Weiss13_84 Weiss13_85 Weiss13_86 Weiss13_87 Weiss13_88 Weiss13_89 Weiss13_90 (HNH endonuclease) Weiss13_91 (DNA primase/polymerase) Weiss13_92 Weiss13_93 (methyltransferase) Weiss13_94 Weiss13_95 Weiss13_96 Weiss13_97 Weiss13_98 Weiss13_99 Weiss13_100
Submitted Annotation in DNA Master Format	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	KT591076
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	1
Pitt Freezer Box Grid#	H1
Available Files
EM Picture	Download
Final DNAMaster File	Download

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