Microbacterium phage ValentiniPuff
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Detailed Information for Phage ValentiniPuff
Discovery Information
Isolation HostMicrobacterium paraoxydans NRRL B-14843
Found ByKylie Myers
Year Found2017
Location FoundFairchild, WI United States
Finding InstitutionUniversity of Wisconsin-River Falls
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature28°C
GPS Coordinates44.637839 N, 91.000214 W Map
Discovery Notesfound in grassy area where cows eat
soil condition: little moist, clumpy, and dark
Naming NotesNamed after my favorite saltwater fish a cute Valentini puffer fish
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 8, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage898
Genome length (bp)62517
Character of genome endsCircularly Permuted
End Determination Notessequence was cut at the first place upstream of the terminase
GC Content67.4%
Sequencing NotesThe assembly contains some mixed reads that align to the phage sequence and some other sequence (possible host DNA). The assembly also contains some contigs that blast to Microbacterium plasmid.
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotation StatusIn GenBank
Plaque Notessize and shape: uniform
description: turbid with halo fading
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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ValentiniPuff_1

ValentiniPuff_2
(ParB-like nuclease domain protein)

ValentiniPuff_3

ValentiniPuff_4
(terminase)

ValentiniPuff_5
(portal protein)

ValentiniPuff_6
(capsid maturation protease)

ValentiniPuff_7

ValentiniPuff_8

ValentiniPuff_9

ValentiniPuff_10

ValentiniPuff_11

ValentiniPuff_12

ValentiniPuff_13

ValentiniPuff_14

ValentiniPuff_15

ValentiniPuff_16

ValentiniPuff_17

ValentiniPuff_18

ValentiniPuff_19

ValentiniPuff_20

ValentiniPuff_21
(membrane protein)

ValentiniPuff_22

ValentiniPuff_23

ValentiniPuff_24

ValentiniPuff_25

ValentiniPuff_26

ValentiniPuff_27

ValentiniPuff_28

ValentiniPuff_29

ValentiniPuff_30
(membrane protein)

ValentiniPuff_31

ValentiniPuff_32

ValentiniPuff_33

ValentiniPuff_34

ValentiniPuff_35

ValentiniPuff_36

ValentiniPuff_37

ValentiniPuff_38

ValentiniPuff_39

ValentiniPuff_40

ValentiniPuff_41

ValentiniPuff_42

ValentiniPuff_43

ValentiniPuff_44

ValentiniPuff_45

ValentiniPuff_46

ValentiniPuff_47

ValentiniPuff_48

ValentiniPuff_49

ValentiniPuff_50

ValentiniPuff_51

ValentiniPuff_52

ValentiniPuff_53

ValentiniPuff_54

ValentiniPuff_55

ValentiniPuff_56
(major capsid protein)

ValentiniPuff_57

ValentiniPuff_58

ValentiniPuff_59
(minor capsid protein)

ValentiniPuff_60
(minor tail protein)

ValentiniPuff_61

ValentiniPuff_62

ValentiniPuff_63

ValentiniPuff_64
(minor tail protein)

ValentiniPuff_65
(major tail protein)

ValentiniPuff_66

ValentiniPuff_67
(tape measure protein)

ValentiniPuff_68
(mnor tail protein)

ValentiniPuff_69

ValentiniPuff_70

ValentiniPuff_71
(minor tail protein)

ValentiniPuff_72

ValentiniPuff_73

ValentiniPuff_74

ValentiniPuff_75

ValentiniPuff_76

ValentiniPuff_77

ValentiniPuff_78

ValentiniPuff_79

ValentiniPuff_80

ValentiniPuff_81

ValentiniPuff_82

ValentiniPuff_83

ValentiniPuff_84

ValentiniPuff_85

ValentiniPuff_86

ValentiniPuff_87

ValentiniPuff_88
(lysin A)

ValentiniPuff_89
(helix-turn-helix DNA binding domain protein)

ValentiniPuff_90
(helix-turn-helix DNA binding domain protein)

ValentiniPuff_91

ValentiniPuff_92

ValentiniPuff_93

ValentiniPuff_94

ValentiniPuff_95

ValentiniPuff_96

ValentiniPuff_97

ValentiniPuff_98
(RecT-like ssDNA binding protein)

ValentiniPuff_99

ValentiniPuff_100

ValentiniPuff_101
(HNH endonuclease)

ValentiniPuff_102

ValentiniPuff_103

ValentiniPuff_104

ValentiniPuff_105
(ssDNA binding protein)

ValentiniPuff_106

ValentiniPuff_107

ValentiniPuff_108
(RuvC-like resolvase)

ValentiniPuff_109

ValentiniPuff_110

ValentiniPuff_111

ValentiniPuff_112

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH825712
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 70
Pitt Freezer Box Grid# A1
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload