Arthrobacter phage Whytu
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| Detailed Information for Phage Whytu | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Found By | Lucy Nakashima |
| Year Found | 2019 |
| Location Found | Marina del Rey, CA USA |
| Finding Institution | University of California, Los Angeles |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 25°C |
| GPS Coordinates | 33.9837 N, 118.4319 W Map |
| Discovery Notes | Arthrobacter phage Whytu was isolated by Lucy Nakashima from soil by direct plating at 25ºC. The site was a part that included a playground and an open, grassy area for dogs. There were some trees around the site, as well as gopher holes in the ground. The soil was collected from the far side of the part near the cement walkway. The phage was characterized by Team All the World’s a Phage (Sarah Fett, Mujtahid Rahman, Vincent Tse, Aida Vargas) and Team PhageBook (Lucy Nakashima, Breanna Cayabyab, Haoyuan Liu). |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 3, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 5895 |
| Genome length (bp) | 15369 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 15 bases |
| Overhang Sequence | CCACGGTCCCCGTCC |
| GC Content | 64.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | FE |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to View |
| Annotating Institution | University of California, Los Angeles |
| Annotation Status | In GenBank |
| Plaque Notes | Description of plaque morphology: Clear Average size (and size range) diameter in mm: 2mm (1mm on some plates, 3 mm on others) |
| Morphotype | Siphoviridae |
| Number of Genes | 22 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewWhytu_1 Whytu_2 Whytu_3 Whytu_4 Whytu_5 Whytu_6 Whytu_7 Whytu_8 Whytu_9 Whytu_10 Whytu_11 Whytu_12 Whytu_13 Whytu_14 Whytu_15 Whytu_16 Whytu_17 Whytu_18 Whytu_19 Whytu_20 Whytu_21 Whytu_22 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MT024870 |
| Refseq Number | None yet |
| Published in Paper | Demo et al 2021, PLOS ONE: BlueFeather, the singleton that wasn’t: Shared gene content analysis supports expansion of Arthrobacter phage Cluster FE |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 116 |
| Pitt Freezer Box Grid# | D2 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |