Arthrobacter phage Berka


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Detailed Information for Phage Berka | |
Discovery Information | |
Isolation Host | Arthrobacter globiformis B-2979 |
Found By | Mawaia Elkbouli |
Year Found | 2020 |
Location Found | Ottawa, Canada |
Finding Institution | University of Ottawa |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 10°C |
GPS Coordinates | 45.369861 N, 75.731167 W Map |
Discovery Notes | This phage was found from a puddle found in Ottawa's Experimental Farms. The phage is to be extracted soon. |
Naming Notes | The phage was extracted from a puddle. In Arabic, berka means puddle. Given that I was born and raised in Libya, I wanted to add an Arabic touch to my phage. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Mar 2, 2021 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 204 |
Genome length (bp) | 15178 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 12 bases |
Overhang Sequence | GGTTCCCTACCA |
GC Content | 65.2% |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | FE |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members | |
Annotating Institution | University of Ottawa |
Annotation Status | Being Annotated (Expected completion by 9/2/2021) |
Plaque Notes | Large and round bulls-eye plaques |
Has been Phamerated? | Yes |
Gene List |
Click to ViewBerka_Draft_1 Berka_Draft_2 Berka_Draft_3 Berka_Draft_4 Berka_Draft_5 Berka_Draft_6 Berka_Draft_7 Berka_Draft_8 Berka_Draft_9 Berka_Draft_10 Berka_Draft_11 Berka_Draft_12 Berka_Draft_13 Berka_Draft_14 Berka_Draft_15 Berka_Draft_16 Berka_Draft_17 Berka_Draft_18 Berka_Draft_19 Berka_Draft_20 Berka_Draft_21 Berka_Draft_22 Berka_Draft_23 Berka_Draft_24 Berka_Draft_25 Berka_Draft_26 |
Publication Info | |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Archived |
Pitt Freezer Box# | 128 |
Pitt Freezer Box Grid# | D7 |