Arthrobacter phage Berka
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| Detailed Information for Phage Berka | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Found By | Mawaia Elkbouli |
| Year Found | 2020 |
| Location Found | Ottawa, Canada |
| Finding Institution | University of Ottawa |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 10°C |
| GPS Coordinates | 45.369861 N, 75.731167 W Map |
| Discovery Notes | This phage was found from a puddle found in Ottawa's Experimental Farms. The phage is to be extracted soon. |
| Naming Notes | The phage was extracted from a puddle. In Arabic, berka means puddle. Given that I was born and raised in Libya, I wanted to add an Arabic touch to my phage. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Mar 2, 2021 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 204 |
| Genome length (bp) | 15178 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 12 bases |
| Overhang Sequence | GGTTCCCTACCA |
| GC Content | 65.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | FE |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotating Institution | University of Ottawa |
| Annotation Status | Being Annotated (Expected completion by 9/2/2021) |
| Plaque Notes | Large and round bulls-eye plaques |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewBerka_Draft_1 Berka_Draft_2 Berka_Draft_3 Berka_Draft_4 Berka_Draft_5 Berka_Draft_6 Berka_Draft_7 Berka_Draft_8 Berka_Draft_9 Berka_Draft_10 Berka_Draft_11 Berka_Draft_12 Berka_Draft_13 Berka_Draft_14 Berka_Draft_15 Berka_Draft_16 Berka_Draft_17 Berka_Draft_18 Berka_Draft_19 Berka_Draft_20 Berka_Draft_21 Berka_Draft_22 Berka_Draft_23 Berka_Draft_24 Berka_Draft_25 Berka_Draft_26 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 128 |
| Pitt Freezer Box Grid# | D7 |