Mycobacterium phage Nilo
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Detailed Information for Phage Nilo
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByElsie Guevara
Year Found2012
Location FoundSheffield, MA USA
Finding InstitutionBerkshire School
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates42.118153 N, 73.413545 W Map
Discovery NotesCollected from an herb garden that had cold, moist, rich soil.
Naming NotesNilo is derived from my Dad's name, Petronilo. He suggested that I name my first virus after him.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 7, 2013
Sequencing FacilityUniversity of Pennsylvania DNA Sequencing Facility
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage94
Genome length (bp)71752
Character of genome endsCircularly Permuted
GC Content56.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterR
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesNilo makes clear pinprick plaques of about 0.5 mm in diameter, sometimes with uneven edges.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Nilo_1

Nilo_2

Nilo_3

Nilo_4

Nilo_5
(terminase)

Nilo_6

Nilo_7
(portal protein)

Nilo_8

Nilo_9

Nilo_10

Nilo_11

Nilo_12

Nilo_13
(capsid maturation protease)

Nilo_14

Nilo_15

Nilo_16

Nilo_17
(major capsid protein)

Nilo_18
(ssDNA binding protein)

Nilo_19

Nilo_20

Nilo_21

Nilo_22
(head-to-tail connector complex protein)

Nilo_23

Nilo_24

Nilo_25
(major tail protein)

Nilo_26
(tail assembly chaperone)

Nilo_27
(tail assembly chaperone)

Nilo_28
(tape measure protein)

Nilo_29
(minor tail protein)

Nilo_30
(minor tail protein)

Nilo_31
(minor tail protein)

Nilo_32
(minor tail protein)

Nilo_33
(minor tail protein)

Nilo_34

Nilo_35

Nilo_36
(lysin A)

Nilo_37

Nilo_38

Nilo_39

Nilo_40
(lysin B)

Nilo_41
(glutaredoxin)

Nilo_42

Nilo_43

Nilo_44

Nilo_45

Nilo_46

Nilo_47

Nilo_48

Nilo_49

Nilo_50

Nilo_51
(helix-turn-helix DNA binding domain protein)

Nilo_52

Nilo_53

Nilo_54

Nilo_55

Nilo_56

Nilo_57

Nilo_58

Nilo_59

Nilo_60

Nilo_61

Nilo_62

Nilo_63

Nilo_64

Nilo_65
(O-methyltransferase)

Nilo_66

Nilo_67

Nilo_68
(DNA helicase)

Nilo_69

Nilo_70
(O-methyltransferase subunit)

Nilo_71
(exonuclease)

Nilo_72
(AAA-ATPase)

Nilo_73
(O-methyltransferase subunit)

Nilo_74
(DNA polymerase III alpha subunit)

Nilo_75

Nilo_76
(DNA polymerase III alpha subunit)

Nilo_77

Nilo_78
(thymidylate synthase)

Nilo_79

Nilo_80
(membrane protein)

Nilo_81
(N-glycosidase)

Nilo_82

Nilo_83

Nilo_84

Nilo_85

Nilo_86
(resolvase)

Nilo_87

Nilo_88

Nilo_89

Nilo_90
(nucleotide pyrophosphohydrolase)

Nilo_91

Nilo_92

Nilo_93
(HNH endonuclease)

Nilo_94
(DNA primase/polymerase)

Nilo_95

Nilo_96
(DNA methyltransferase)

Nilo_97

Nilo_98

Nilo_99

Nilo_100

Nilo_101

Nilo_102

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH001447
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
Pitt Freezer Box# 2
Pitt Freezer Box Grid# E5
Available Files
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload