Mycobacterium phage Riparian
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Detailed Information for Phage Riparian
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByVanessa Cadiz, Kevin Ayala-Pineda, Renzo Costa
Year Found2017
Location FoundLas Vegas , NV USA
Finding InstitutionUniversity of Nevada Las Vegas
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates36.103961 N, 115.020223 W Map
Discovery NotesThe phage was discovered at the wetlands park near a pond. There were several plants and bushes near the location it was dug up. The soil was damp and conditions were near 90 degrees Celsius 9.3cm of soil was dug up.
Naming NotesA riparium is a cluster of plants found along the edges of lakes, rivers, pond and streams. Since the area of phage discovery had several plants and it was next to a pond, Riparium is a perfect name.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 12, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1158
Genome length (bp)71199
Character of genome endsCircularly Permuted
GC Content56.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterR
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotation StatusQC Complete
Plaque NotesRiparium plaques are extremely small All plaques have a dark shade on the outer circumference.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Riparian_1
(terminase, small subunit)

Riparian_2

Riparian_3

Riparian_4

Riparian_5
(terminase, large subunit)

Riparian_6
(portal protein)

Riparian_7

Riparian_8

Riparian_9

Riparian_10

Riparian_11
(tail assembly protein)

Riparian_12
(capsid assembly protease)

Riparian_13

Riparian_14

Riparian_15
(tail sheath protein)

Riparian_16
(major capsid protein)

Riparian_17
(ssDNA binding protein)

Riparian_18

Riparian_19

Riparian_20

Riparian_21
(head-tail connector complex protein)

Riparian_22

Riparian_23

Riparian_24
(major tail protein)

Riparian_25
(tail assembly chaperone)

Riparian_26
(tail assembly chaperone)

Riparian_27
(tape measure protein)

Riparian_28
(minor tail protein)

Riparian_29
(minor tail protein)

Riparian_30
(minor tail protein)

Riparian_31
(minor tail protein)

Riparian_32

Riparian_33

Riparian_34

Riparian_35
(lysin A)

Riparian_36

Riparian_37

Riparian_38

Riparian_39
(lysin B)

Riparian_40
(NrdH glutaredoxin)

Riparian_41

Riparian_42

Riparian_43

Riparian_44

Riparian_45

Riparian_46

Riparian_47

Riparian_48

Riparian_49

Riparian_50
(helix-turn-helix DNA binding domain protein)

Riparian_51

Riparian_52

Riparian_53

Riparian_54

Riparian_55

Riparian_56

Riparian_57
(membrane protein)

Riparian_58

Riparian_59

Riparian_60

Riparian_61

Riparian_62

Riparian_63

Riparian_64

Riparian_65
(O-methyltransferase)

Riparian_66

Riparian_67

Riparian_68
(DNA helicase)

Riparian_69

Riparian_70

Riparian_71
(nuclease)

Riparian_72
(RecA-like DNA recombinase)

Riparian_73

Riparian_74
(DnaE-like DNA polymerase III (alpha))

Riparian_75
(DNA polymerase III)

Riparian_76
(DNA polymerase III alpha subunit)

Riparian_77

Riparian_78
(thymidylate synthase)

Riparian_79

Riparian_80
(membrane protein, Band-7-like)

Riparian_81
(hypoothetical protein)

Riparian_82

Riparian_83

Riparian_84

Riparian_85
(resolvase RuvC-like)

Riparian_86

Riparian_87

Riparian_88

Riparian_89
(MazG-like nucleotide pyrophosphohydrolase)

Riparian_90

Riparian_91

Riparian_92
(HNH endonuclease)

Riparian_93
(DNA primase/polymerase)

Riparian_94

Riparian_95
(DNA methylase)

Riparian_96

Riparian_97

Riparian_98

Riparian_99

Riparian_100

Riparian_101

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 52
Pitt Freezer Box Grid# D4
Available Files
GenBank File for PhameratorDownload