Streptomyces phage Romero
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Detailed Information for Phage Romero
Discovery Information
Isolation HostStreptomyces griseus ATCC 10137
Found ByZandra Romero
Year Found2017
Location FoundVenus, TX Johnson
Finding InstitutionUniversity of North Texas
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature25°C
GPS Coordinates32.416202 N, 97.100147 W Map
Discovery NotesI collected the soil sample on January 15, 2017. The weather was cloudy and it rained the day before. The soil can be described as muddy, wet, it had plant roots, leaves.
Naming NotesI decided to name it after my family last name.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 2, 2017
Sequencing FacilityUniversity of North Texas
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage209
Genome length (bp)46079
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length264 bp
GC Content59.7%
Sequencing NotesWhile one end of the terminal repeat was obvious in the sequencing reads for this project, the other end was far less so. A buildup of reads was observed at a position that matched the right side of the terminal repeat in other similar phages, so that was selected as the right end of the terminal repeat.
Fasta file available?Yes: Download fasta file
Characterization
ClusterBF
Subcluster--
Other Cluster Members
Plaque NotesAverage diameter of plaques is around 1.5 mm. Plaques were normally clear and round.
MorphotypePodoviridae
Final annotation complete?Yes
Number of Genes64
Number of tRNAs22
Has been Phamerated?Yes
Gene List
Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMG663584
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload