Discovery Information |
Isolation Host | Arthrobacter globiformis B-2979 |
Found By | Lilianna Rolands |
Year Found | 2019 |
Location Found | River Falls, WI United States |
Finding Institution | University of Wisconsin-River Falls |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 28°C |
GPS Coordinates | 44.853056 N, 92.627778 W Map |
Discovery Notes | The soil was collected from a small forested area behind Stratton Hall on the UW-River Falls campus. It was cloudy, a little chilly, and had been raining.The soil was damp and packed. |
Naming Notes | Named after the world-carrying space turtle in the Discworld books by Sir Terry Pratchett. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 27, 2020 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 575 |
Genome length (bp) | 194200 |
Character of genome ends | Direct Terminal Repeat |
Direct Terminal Repeat Length | 17312 bp |
End Determination Notes | At first, we thought Cluster FC phages had no defined ends and were circularly permuted, but as we sequenced more, it became clear that the genomes had a region of double coverage, which is characteristic of a direct terminal repeat. As with some other phages, the right end of the terminal repeat is well-defined, while the left end is less clear. |
GC Content | 54.2% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | FC |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
|
Annotating Institution | University of Wisconsin-River Falls |
Annotation Status | In GenBank |
Plaque Notes | Plaques are small pinpoints, about 1mm in diameter, and are round, and clear. They have no halo and are uniform. |
Morphotype | Siphoviridae |
Number of Genes | 316 |
Number of tRNAs | 30 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | OK040794 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
102 |
Pitt Freezer Box Grid# |
E3 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |