The Actinobacteriophage Database

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Detailed Information for Phage Racecar
Discovery Information
Isolation Host	Arthrobacter globiformis B-2979
Found By	Patrick Rimple
Year Found	2017
Location Found	Buffalo, NY USA
Finding Institution	University of Pittsburgh
Program	Phage Hunters Integrating Research and Education
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	42.93382 N, 78.64562 W Map
Discovery Notes	Came from a dirt pile used in landscaping
Naming Notes	palindromes are cool and so is my dad which is what made me think to use this name
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Sep 11, 2017
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Sequencer Used	Illumina MiSeq
Read Type	Single-end reads
Read Length	150 bp
Approximate Shotgun Coverage	223
Genome length (bp)	194177
Character of genome ends	Direct Terminal Repeat
Direct Terminal Repeat Length	20468 bp
GC Content	53.2%
Sequencing Notes	At first, we thought Cluster FC phages had no defined ends and were circularly permuted, but as we sequenced more, it became clear that the genomes had a region of double coverage, which is characteristic of a direct terminal repeat. As with some other phages, the right end of the terminal repeat is well-defined, while the left end is less clear.
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	FC
Subcluster	--
Cluster Life Cycle	Lytic
Other Cluster Members	Click to View Atuin Bloom Chilliams DunneganBoMo Ellewin GoldenEssence KSunshine22 LeoJr Mimi Panchaali Patbob Phrampa Racecar ReginaGlobina Rockabye SJReid Talia1610 WaddleDee
Annotating Institution	University of Pittsburgh
Annotation Status	In GenBank
Plaque Notes	clear plaques 1 mm or less in size
Morphotype	Siphoviridae
Number of Genes	303
Number of tRNAs	31
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Racecar_1 Racecar_2 Racecar_3 Racecar_4 Racecar_5 (ParB-like nuclease domain) Racecar_6 Racecar_7 Racecar_8 Racecar_9 Racecar_10 Racecar_11 Racecar_12 Racecar_13 Racecar_14 Racecar_15 Racecar_16 Racecar_17 Racecar_18 Racecar_19 Racecar_20 Racecar_21 Racecar_22 Racecar_23 Racecar_24 Racecar_25 Racecar_26 Racecar_27 Racecar_28 Racecar_29 Racecar_30 Racecar_31 Racecar_32 Racecar_33 Racecar_34 Racecar_35 Racecar_36 Racecar_37 Racecar_38 Racecar_39 Racecar_40 Racecar_41 Racecar_42 Racecar_43 Racecar_44 Racecar_45 Racecar_46 Racecar_47 Racecar_48 Racecar_49 Racecar_50 Racecar_51 Racecar_52 Racecar_53 Racecar_54 Racecar_55 Racecar_56 Racecar_57 Racecar_58 Racecar_59 Racecar_60 Racecar_61 Racecar_62 Racecar_63 Racecar_64 (ADP-ribosyltransferase) Racecar_65 Racecar_66 Racecar_67 Racecar_68 Racecar_69 (phosphoribosyl transferase) Racecar_70 Racecar_71 (nicotinate ribosyltransferase) Racecar_72 Racecar_73 (helix-turn-helix DNA binding domain) Racecar_74 Racecar_75 Racecar_76 Racecar_77 (portal protein) Racecar_78 (DNA helicase) Racecar_79 Racecar_80 Racecar_81 (capsid maturation protease) Racecar_82 (major capsid hexamer protein) Racecar_83 Racecar_84 Racecar_85 (head-to-tail adaptor) Racecar_86 Racecar_87 Racecar_88 Racecar_89 (tail assembly chaperone) Racecar_90 Racecar_91 (tape measure protein) Racecar_92 (minor tail protein) Racecar_93 (minor tail protein) Racecar_94 (minor tail protein) Racecar_95 (minor tail protein) Racecar_96 Racecar_97 Racecar_98 Racecar_99 Racecar_100 (DNA polymerase I) Racecar_101 (RuvC-like resolvase) Racecar_102 (DNA helicase) Racecar_103 (ThyX-like thymidylate synthase) Racecar_104 (Cas4-family exonuclease) Racecar_105 (RecA-like DNA recombinase) Racecar_106 (SSB protein) Racecar_107 (MazG-like nucleotide pyrophosphohydrolase) Racecar_108 Racecar_109 (NrdH-like glutaredoxin) Racecar_110 (ribonucleotide reductase) Racecar_111 (ribonucleotide reductase) Racecar_112 (ribonucleotide reductase) Racecar_113 Racecar_114 Racecar_115 Racecar_116 — tRNA (tRNA-Trp(cca)) Racecar_117 — tRNA (tRNA-Pro(tgg)) Racecar_118 — tRNA (tRNA-Gly(tcc)) Racecar_119 — tRNA (tRNA-Thr(tgt)) Racecar_120 — tRNA (tRNA-Phe(gaa)) Racecar_121 — tRNA (tRNA-Gln(ttg)) Racecar_122 Racecar_123 — tRNA (tRNA-Gln(ctg)) Racecar_124 — tRNA (tRNA-Ser(tga)) Racecar_125 — tRNA (tRNA-Ile(gat)) Racecar_126 Racecar_127 — tRNA (tRNA-Glu(ttc)) Racecar_128 — tRNA (tRNA-Glu(ctc)) Racecar_129 — tRNA (tRNA-Ser(tga)) Racecar_130 — tRNA (tRNA-Val(tac)) Racecar_131 — tRNA (tRNA-Leu(caa)) Racecar_132 — tRNA (tRNA-Ile(tat)) Racecar_133 Racecar_134 — tRNA (tRNA-Arg(acg)) Racecar_135 (Holliday junction resolvase) Racecar_136 Racecar_137 — tRNA (tRNA-Leu(gag)) Racecar_138 Racecar_139 — tRNA (tRNA-Leu(tag)) Racecar_140 — tRNA (tRNA-Arg(tct)) Racecar_141 — tRNA (tRNA-Tyr(gta)) Racecar_142 — tRNA (tRNA-Lys(ctt)) Racecar_143 — tRNA (tRNA-Lys(ttt)) Racecar_144 Racecar_145 Racecar_146 Racecar_147 Racecar_148 Racecar_149 (endolysin) Racecar_150 (endolysin, protease domain) Racecar_151 — tRNA (tRNA-Met(cat)) Racecar_152 Racecar_153 Racecar_154 (DnaE-like DNA polymerase III (alpha)) Racecar_155 Racecar_156 — tRNA (tRNA-Met(cat)) Racecar_157 — tRNA (tRNA-Asn(gtt)) Racecar_158 — tRNA (tRNA-Ala(tgc)) Racecar_159 Racecar_160 — tRNA (tRNA-Asp(gtc)) Racecar_161 (RNA ligase) Racecar_162 — tRNA (tRNA-His(gtg)) Racecar_163 (UDP-glucose dehydrogenase) Racecar_164 (helix-turn-helix DNA binding domain) Racecar_165 Racecar_166 Racecar_167 — tRNA (tRNA-Arg(cct)) Racecar_168 — tRNA (tRNA-Thr(ggt)) Racecar_169 — tRNA (tRNA-Cys(gca)) Racecar_170 (HNH endonuclease) Racecar_171 (MRE11 double-strand break endo/exonuclease) Racecar_172 Racecar_173 Racecar_174 (glycosyltransferase) Racecar_175 Racecar_176 Racecar_177 (glycosyltransferase) Racecar_178 (glycosyltransferase) Racecar_179 (nucleotidyl transferase) Racecar_180 Racecar_181 (RNA ligase) Racecar_182 Racecar_183 (polynucleotide kinase) Racecar_184 Racecar_185 (tRNA nucleotidyltransferase) Racecar_186 (RecA-like DNA recombinase) Racecar_187 Racecar_188 Racecar_189 (minor tail protein) Racecar_190 Racecar_191 (Nucleotidyl transferase) Racecar_192 Racecar_193 (WhiB family transcription factor) Racecar_194 (DNA helicase) Racecar_195 (DNA primase) Racecar_196 Racecar_197 Racecar_198 (HNH endonuclease) Racecar_199 Racecar_200 (DNA helicase) Racecar_201 Racecar_202 Racecar_203 Racecar_204 Racecar_205 Racecar_206 Racecar_207 Racecar_208 Racecar_209 (terminase) Racecar_210 Racecar_211 Racecar_212 Racecar_213 Racecar_214 Racecar_215 (SprT-like protease) Racecar_216 Racecar_217 Racecar_218 Racecar_219 Racecar_220 Racecar_221 Racecar_222 Racecar_223 Racecar_224 Racecar_225 Racecar_226 Racecar_227 Racecar_228 Racecar_229 Racecar_230 Racecar_231 Racecar_232 Racecar_233 Racecar_234 Racecar_235 Racecar_236 Racecar_237 Racecar_238 Racecar_239 Racecar_240 Racecar_241 Racecar_242 Racecar_243 Racecar_244 Racecar_245 Racecar_246 Racecar_247 Racecar_248 Racecar_249 Racecar_250 Racecar_251 Racecar_252 Racecar_253 (glycoside hydrolase) Racecar_254 Racecar_255 Racecar_256 Racecar_257 Racecar_258 Racecar_259 Racecar_260 Racecar_261 Racecar_262 Racecar_263 Racecar_264 Racecar_265 Racecar_266 Racecar_267 Racecar_268 Racecar_269 Racecar_270 Racecar_271 Racecar_272 Racecar_273 Racecar_274 Racecar_275 Racecar_276 (helix-turn-helix DNA binding domain) Racecar_277 Racecar_278 Racecar_279 Racecar_280 Racecar_281 Racecar_282 Racecar_283 Racecar_284 Racecar_285 Racecar_286 Racecar_287 Racecar_288 Racecar_289 Racecar_290 Racecar_291 Racecar_292 Racecar_293 Racecar_294 Racecar_295 Racecar_296 Racecar_297 Racecar_298 Racecar_299 Racecar_300 Racecar_301 Racecar_302 Racecar_303 Racecar_304 Racecar_305 Racecar_306 Racecar_307 Racecar_308 Racecar_309 Racecar_310 Racecar_311 Racecar_312 Racecar_313 Racecar_314 Racecar_315 Racecar_316 Racecar_317 Racecar_318 Racecar_319 Racecar_320 Racecar_321 Racecar_322 Racecar_323 Racecar_324 Racecar_325 Racecar_326 Racecar_327 Racecar_328 Racecar_329 Racecar_330 Racecar_331 Racecar_332 Racecar_333 Racecar_334
Submitted Minimal DNA Master File	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MN234206
Refseq Number	None yet
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	6
Pitt Freezer Box Grid#	C8
Available Files
Plaque Picture	Download
EM Picture	Download
Final DNAMaster File	Download
GenBank File for Phamerator	Download

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