Gordonia phage BBQValindra
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Detailed Information for Phage BBQValindra
Discovery Information
Isolation HostGordonia terrae 3612
Found ByStephen Rezack
Year Found2019
Location FoundOrono, ME United States
Finding InstitutionUniversity of Maine, Honors College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates44.897154 N, 68.668771 W Map
Discovery NotesSoil was extracted underneath a banana tree at the University of Maine greenhouse
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 22, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1952
Genome length (bp)46875
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCCGCGGTA
GC Content67.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDB
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Maine, Honors College
Annotation StatusIn GenBank
Number of Genes67
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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BBQValindra_1
(terminase small subunit)

BBQValindra_2
(terminase large subunit)

BBQValindra_3
(portal protein)

BBQValindra_4
(capsid maturation protease)

BBQValindra_5
(scaffolding protein)

BBQValindra_6
(major capsid protein)

BBQValindra_7

BBQValindra_8
(head-to-tail adaptor)

BBQValindra_9
(head-to-tail stopper)

BBQValindra_10

BBQValindra_11
(tail terminator)

BBQValindra_12
(major tail protein)

BBQValindra_13

BBQValindra_14
(tail assembly chaperone)

BBQValindra_15
(tail assembly chaperone)

BBQValindra_16

BBQValindra_17
(tape measure protein)

BBQValindra_18
(minor tail protein)

BBQValindra_19
(minor tail protein)

BBQValindra_20

BBQValindra_21
(lysin A)

BBQValindra_22
(holin)

BBQValindra_23

BBQValindra_24

BBQValindra_25

BBQValindra_26
(lysin B)

BBQValindra_27
(minor tail protein)

BBQValindra_28

BBQValindra_29
(minor tail protein)

BBQValindra_30

BBQValindra_31

BBQValindra_32

BBQValindra_33
(helix-turn-helix DNA binding domain protein)

BBQValindra_34

BBQValindra_35
(tyrosine integrase)

BBQValindra_36

BBQValindra_37
(tyrosine integrase)

BBQValindra_38

BBQValindra_39
(immunity repressor)

BBQValindra_40
(helix-turn-helix DNA binding domain protein)

BBQValindra_41

BBQValindra_42

BBQValindra_43

BBQValindra_44

BBQValindra_45

BBQValindra_46

BBQValindra_47

BBQValindra_48

BBQValindra_49

BBQValindra_50
(ParB-like nuclease domain protein)

BBQValindra_51

BBQValindra_52

BBQValindra_53
(DNA polymerase III sliding clamp)

BBQValindra_54

BBQValindra_55

BBQValindra_56

BBQValindra_57

BBQValindra_58
(DNA polymerase III subunit)

BBQValindra_59
(helix-turn-helix DNA binding domain protein)

BBQValindra_60
(HNH endonuclease)

BBQValindra_61

BBQValindra_62

BBQValindra_63

BBQValindra_64

BBQValindra_65

BBQValindra_66
(helix-turn-helix DNA binding domain protein)

BBQValindra_67
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT522006
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.04x10^11
Pitt Freezer Box# 109
Pitt Freezer Box Grid# E7
Available Files
Plaque PictureDownload
Virtual Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload