Arthrobacter phage Berka
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| Detailed Information for Phage Berka | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis NRRL B-2880 |
| Found By | Mawaia Elkbouli |
| Year Found | 2020 |
| Location Found | Ottawa, Canada |
| Finding Institution | University of Ottawa |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 10°C |
| GPS Coordinates | 45.369861 N, 75.731167 W Map |
| Discovery Notes | This phage was found from a puddle found in Ottawa's Experimental Farms. The phage is to be extracted soon. |
| Naming Notes | The phage was extracted from a puddle. In Arabic, berka means puddle. Given that I was born and raised in Libya, I wanted to add an Arabic touch to my phage. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Mar 2, 2021 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 204 |
| Genome length (bp) | 15178 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 12 bases |
| Overhang Sequence | GGTTCCCTACCA |
| GC Content | 65.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | FE |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to View |
| Annotating Institution | University of Ottawa |
| Annotation Status | In GenBank |
| Plaque Notes | Large and round bulls-eye plaques |
| Number of Genes | 27 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewBerka_1 Berka_2 Berka_3 Berka_4 Berka_5 Berka_6 Berka_7 Berka_8 Berka_9 Berka_10 Berka_11 Berka_12 Berka_13 Berka_14 Berka_15 Berka_16 Berka_17 Berka_18 Berka_19 Berka_20 Berka_21 Berka_22 Berka_23 Berka_24 Berka_25 Berka_26 Berka_27 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OQ938593 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 133 |
| Pitt Freezer Box Grid# | H6 |
| Available Files | |
| Restriction Digest Picture | Download |
| GenBank File for Phamerator | Download |
