Gordonia phage Beyoncage
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Detailed Information for Phage Beyoncage
Discovery Information
Isolation HostGordonia terrae 3612
Former namesFormation
Found ByCiearra Shuford
Year Found2016
Location FoundPittsburgh, PA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature37°C
GPS Coordinates40.444276 N, 79.953247 W Map
Discovery NotesPhage was collected from the base of a tree. The tree was surrounded by plants that have been previously planted in the same area.
Naming NotesThe name of the phage is a mixture of Beyonce and phage.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 2, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage2370
Genome length (bp)66610
Character of genome endsCircularly Permuted
GC Content59.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDG
SubclusterDG1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionHampden-Sydney College
Annotation StatusIn GenBank
Plaque NotesThe phage is small and circular in shape. It does not have any halos.
MorphotypeSiphoviridae
Number of Genes96
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Beyoncage_1
(terminase)

Beyoncage_2
(portal protein)

Beyoncage_3

Beyoncage_4

Beyoncage_5

Beyoncage_6

Beyoncage_7

Beyoncage_8

Beyoncage_9

Beyoncage_10
(minor capsid protein)

Beyoncage_11
(major capsid protein)

Beyoncage_12

Beyoncage_13

Beyoncage_14

Beyoncage_15

Beyoncage_16
(head-to-tail connector complex protein)

Beyoncage_17

Beyoncage_18

Beyoncage_19
(major tail protein)

Beyoncage_20
(tail assembly chaperone)

Beyoncage_21
(tail assembly chaperone)

Beyoncage_22
(tape measure protein)

Beyoncage_23
(minor tail protein)

Beyoncage_24
(minor tail protein)

Beyoncage_25
(minor tail protein)

Beyoncage_26
(minor tail protein)

Beyoncage_27
(minor tail protein)

Beyoncage_28
(minor tail protein)

Beyoncage_29
(lysin A)

Beyoncage_30

Beyoncage_31

Beyoncage_32

Beyoncage_33

Beyoncage_34

Beyoncage_35

Beyoncage_36

Beyoncage_37

Beyoncage_38

Beyoncage_39

Beyoncage_40

Beyoncage_41

Beyoncage_42

Beyoncage_43

Beyoncage_44

Beyoncage_45

Beyoncage_46

Beyoncage_47

Beyoncage_48

Beyoncage_49

Beyoncage_50

Beyoncage_51
(HNH endonuclease)

Beyoncage_52

Beyoncage_53

Beyoncage_54
(exonuclease)

Beyoncage_55

Beyoncage_56

Beyoncage_57

Beyoncage_58

Beyoncage_59
(oxidoreductase)

Beyoncage_60
(methyltransferase)

Beyoncage_61

Beyoncage_62

Beyoncage_63

Beyoncage_64
(DnaE-like DNA polymerase III alpha)

Beyoncage_65

Beyoncage_66
(DnaE-like DNA polymerase III alpha)

Beyoncage_67

Beyoncage_68

Beyoncage_69

Beyoncage_70

Beyoncage_71

Beyoncage_72
(ThyX-like thymidylate synthase)

Beyoncage_73

Beyoncage_74

Beyoncage_75

Beyoncage_76

Beyoncage_77

Beyoncage_78

Beyoncage_79

Beyoncage_80
(RuvC-like resolvase)

Beyoncage_81

Beyoncage_82
(ribbon-helix-helix DNA binding domain protein)

Beyoncage_83
(DNA primase/polymerase)

Beyoncage_84

Beyoncage_85

Beyoncage_86

Beyoncage_87

Beyoncage_88

Beyoncage_89

Beyoncage_90

Beyoncage_91

Beyoncage_92

Beyoncage_93

Beyoncage_94

Beyoncage_95

Beyoncage_96

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH576972
Refseq NumberNone yet
Archiving Info
Archiving status Ignore
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload