Arthrobacter phage CabbageMan
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| Detailed Information for Phage CabbageMan | |
| Discovery Information | |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Found By | Ximena Iraheta |
| Year Found | 2023 |
| Location Found | Montreal, Canada |
| Finding Institution | McGill University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 19°C |
| GPS Coordinates | 45.51499 N, 73.81362 W Map |
| Discovery Notes | September 20th at 12h11pm, it was a sunny and warm day. This moist, organic soil sample was collected by digging 3 inches deep in a flower garden at a park near a river shore. The coordinates of the soil sample collection site are 45.51499 °N and 73.81362 °W. It was stored in a conical tube in a room at 22 °C for about 24 hours. A direct isolation protocol was performed the next day. |
| Naming Notes | It was named after someone special who supported me throughout the semester. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 2, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 4281 |
| Genome length (bp) | 15612 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 15 bases |
| Overhang Sequence | CCCACGTATACCGTCC |
| GC Content | 67.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | FE |
| Subcluster | -- |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
Click to View |
| Annotating Institution | McGill University |
| Annotation Status | In GenBank |
| Plaque Notes | It is a plaque with clear center, with a turbid halo and smooth margin. |
| Number of Genes | 24 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewCabbageMan_1 CabbageMan_2 CabbageMan_3 CabbageMan_4 CabbageMan_5 CabbageMan_6 CabbageMan_7 CabbageMan_8 CabbageMan_9 CabbageMan_10 CabbageMan_11 CabbageMan_12 CabbageMan_13 CabbageMan_14 CabbageMan_15 CabbageMan_16 CabbageMan_17 CabbageMan_18 CabbageMan_19 CabbageMan_20 CabbageMan_21 CabbageMan_22 CabbageMan_23 CabbageMan_24 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PQ362679 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 183 |
| Pitt Freezer Box Grid# | H3 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
