The Actinobacteriophage Database

Mycobacterium phage Damien

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Detailed Information for Phage Damien
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Nancy Adkins
Year Found	2013
Location Found	PIttsburgh, PA USA
Finding Institution	University of Pittsburgh
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	40.442 N, 79.958 W Map
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Nov 13, 2013
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Sequencer Used	Illumina MiSeq
Read Type	Single-end reads
Read Length	150 bp
Approximate Shotgun Coverage	2578
Genome length (bp)	68386
Character of genome ends	Circularly Permuted
GC Content	57.6%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	H
Subcluster	H1
Cluster Life Cycle	Lytic
Other Cluster Members	Click to View Beckerton (H1) Cborch11 (H1) Damien (H1) Konstantine (H1) Megatron06 (H1) Oaker (H1) Phreeze (H1) Predator (H1) Puissant (H1) Thumb (H1) Barnyard (H2) DrLupo (H2)
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Morphotype	Siphoviridae
Number of Genes	93
Number of tRNAs	0
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Damien_1 Damien_2 Damien_3 (capsid accessory protein) Damien_4 (terminase) Damien_5 (portal protein) Damien_6 Damien_7 Damien_8 Damien_9 Damien_10 (capsid maturation protease) Damien_11 (major capsid protein) Damien_12 Damien_13 Damien_14 (minor capsid protein) Damien_15 Damien_16 Damien_17 Damien_18 Damien_19 Damien_20 Damien_21 Damien_22 Damien_23 Damien_24 (tail assembly chaperone) Damien_25 (tail assembly chaperone) Damien_26 (tapemeasure protein) Damien_27 (minor tail protein) Damien_28 (minor tail protein) Damien_29 (minor tail protein) Damien_30 (minor tail protein/D-ala-D-ala carboxypeptidase) Damien_31 (minor tail protein) Damien_32 Damien_33 Damien_34 (lysin A) Damien_35 (holin) Damien_36 Damien_37 Damien_38 (lysin B) Damien_39 Damien_40 Damien_41 Damien_42 Damien_43 Damien_44 Damien_45 Damien_46 Damien_47 Damien_48 Damien_49 Damien_50 Damien_51 Damien_52 Damien_53 Damien_54 Damien_55 Damien_56 Damien_57 Damien_58 Damien_59 Damien_60 Damien_61 (helicase) Damien_62 Damien_63 Damien_64 Damien_65 Damien_66 Damien_67 (nuclease) Damien_68 Damien_69 Damien_70 Damien_71 Damien_72 (AAA-ATPase) Damien_73 Damien_74 Damien_75 Damien_76 Damien_77 (DNA polymerase III alpha subunit) Damien_78 Damien_79 Damien_80 Damien_81 Damien_82 Damien_83 Damien_84 Damien_85 Damien_86 Damien_87 Damien_88 Damien_89 Damien_90 Damien_91 Damien_92 (primase/polymerase) Damien_93
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	KJ567046
Refseq Number	NC_024371
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	1
Pitt Freezer Box Grid#	A4
Available Files
Plaque Picture	Download
EM Picture	Download
Final DNAMaster File	Download

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