Microbacterium phage DesireeRose
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| Detailed Information for Phage DesireeRose | |
| Discovery Information | |
| Isolation Host | Microbacterium testaceum NRRL B-24232 |
| Found By | Desiree Vargas |
| Year Found | 2019 |
| Location Found | Nyack, NY United States of America |
| Finding Institution | Alliance University (formerly Nyack College) |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 41.087873 N, 73.93196 W Map |
| Naming Notes | I decided to name my phage DesireeRose after me (Desiree) because I wanted to be able to look back and know that I was able to find a phage that could possibly help someone one day.In addition, I also love roses. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Aug 19, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 4572 |
| Genome length (bp) | 15488 |
| Character of genome ends | Covalent Terminal Protein |
| End Determination Notes | This phage shows similarity to other Tectiviridae, which generally have covalently-bound terminal proteins. In addition, the sequencing reads end at a specific base without any circularizing reads, and the genome has ~112 bp inverted terminal repeats. Taken together, these lines of evidence point to this phage likely having covalently-bound terminal proteins. |
| GC Content | 55.0% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | GE |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members |
Click to View |
| Annotating Institution | Alliance University (formerly Nyack College) |
| Annotation Status | In GenBank |
| Number of Genes | 32 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewDesireeRose_1 DesireeRose_2 DesireeRose_3 DesireeRose_4 DesireeRose_5 DesireeRose_6 DesireeRose_7 DesireeRose_8 DesireeRose_9 DesireeRose_10 DesireeRose_11 DesireeRose_12 DesireeRose_13 DesireeRose_14 DesireeRose_15 DesireeRose_16 DesireeRose_17 DesireeRose_18 DesireeRose_19 DesireeRose_20 DesireeRose_21 DesireeRose_22 DesireeRose_23 DesireeRose_24 DesireeRose_25 DesireeRose_26 DesireeRose_27 DesireeRose_28 DesireeRose_29 DesireeRose_30 DesireeRose_31 DesireeRose_32 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OL455892 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 97 |
| Pitt Freezer Box Grid# | B7 |
| Available Files | |
| EM Picture | Download |
| GenBank File for Phamerator | Download |