Gordonia phage DinoDaryn
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Detailed Information for Phage DinoDaryn
Discovery Information
Isolation HostGordonia terrae 3612
Found ByLeon Lin
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.44256 N, 79.956541 W Map
Discovery NotesFound in the potted soil beds in front of Litchfield Towers
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 9, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1416
Genome length (bp)44936
Character of genome ends3' Sticky Overhang
Overhang Length12 bases
Overhang SequenceTCCGGGCCGGTA
GC Content66.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCU
SubclusterCU1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque Notessmall, clear, about 1 mm in diameter
MorphotypeSiphoviridae
Number of Genes82
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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DinoDaryn_1

DinoDaryn_2

DinoDaryn_3

DinoDaryn_4

DinoDaryn_5

DinoDaryn_6

DinoDaryn_7
(serine hydrolase)

DinoDaryn_8
(terminase small subunit)

DinoDaryn_9
(terminase large subunit)

DinoDaryn_10
(portal protein)

DinoDaryn_11
(capsid maturation protease)

DinoDaryn_12
(major capsid protein)

DinoDaryn_13

DinoDaryn_14
(head-to-tail adaptor)

DinoDaryn_15
(head-to-tail stopper)

DinoDaryn_16

DinoDaryn_17

DinoDaryn_18
(tail terminator)

DinoDaryn_19
(major tail protein)

DinoDaryn_20
(tail assembly chaperone)

DinoDaryn_21
(tail assembly chaperone)

DinoDaryn_22
(tape measure protein)

DinoDaryn_23
(minor tail protein)

DinoDaryn_24
(minor tail protein)

DinoDaryn_25
(lysin B)

DinoDaryn_26

DinoDaryn_27

DinoDaryn_28
(minor tail protein)

DinoDaryn_29
(minor tail protein)

DinoDaryn_30

DinoDaryn_31
(minor tail protein)

DinoDaryn_32

DinoDaryn_33
(helix-turn-helix DNA binding protein)

DinoDaryn_34

DinoDaryn_35

DinoDaryn_36

DinoDaryn_37

DinoDaryn_38
(tyrosine integrase)

DinoDaryn_39

DinoDaryn_40
(immunity repressor)

DinoDaryn_41
(Cro protein)

DinoDaryn_42
(ssDNA binding protein)

DinoDaryn_43

DinoDaryn_44

DinoDaryn_45

DinoDaryn_46
(Cas4 family exonuclease)

DinoDaryn_47

DinoDaryn_48
(helix-turn-helix DNA binding protein)

DinoDaryn_49
(ssDNA binding protein, ERF family)

DinoDaryn_50

DinoDaryn_51

DinoDaryn_52
(HNH endonuclease)

DinoDaryn_53

DinoDaryn_54
(DnaB-like dsDNA helicase)

DinoDaryn_55
(ssDNA binding protein)

DinoDaryn_56

DinoDaryn_57
(RusA-like resolvase)

DinoDaryn_58

DinoDaryn_59

DinoDaryn_60

DinoDaryn_61
(helix-turn-helix DNA binding protein)

DinoDaryn_62

DinoDaryn_63
(NrdH-like glutaredoxin)

DinoDaryn_64

DinoDaryn_65

DinoDaryn_66
(CobT-like cobalamin biosynthesis protein)

DinoDaryn_67

DinoDaryn_68

DinoDaryn_69

DinoDaryn_70
(nucleoside deoxyribosyltransferase)

DinoDaryn_71

DinoDaryn_72

DinoDaryn_73

DinoDaryn_74

DinoDaryn_75

DinoDaryn_76

DinoDaryn_77

DinoDaryn_78

DinoDaryn_79

DinoDaryn_80

DinoDaryn_81

DinoDaryn_82

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKY471269
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 5
Pitt Freezer Box Grid# C8
Available Files
Final DNAMaster FileDownload
GenBank File for PhameratorDownload