Detailed Information for Phage DirtyBoi |
Discovery Information |
Isolation Host | Gordonia terrae 3612 |
Found By | Halley L Cook; Anisha C Mandava |
Year Found | 2019 |
Location Found | Pittsburgh, PA United States |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 30°C |
GPS Coordinates | 40.4428 N, 79.955 W Map |
Discovery Notes | Soil was damp, possibly freshly watered or could possibly be due to rain. It was very humid and about 77 degrees out at the time of collection. |
Naming Notes | It was inspired by my suitemates. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 5, 2020 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 2617 |
Genome length (bp) | 43833 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TCCCGCGGTA |
GC Content | 67.1% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | DB |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | University of Pittsburgh |
Annotation Status | In GenBank |
Plaque Notes | Turbid, distinct haloes around the center. |
Number of Genes | 68 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MT771341 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
114 |
Pitt Freezer Box Grid# |
B3 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |