Gordonia phage DirtyBoi
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Detailed Information for Phage DirtyBoi
Discovery Information
Isolation HostGordonia terrae 3612
Found ByHalley L Cook; Anisha C Mandava
Year Found2019
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.4428 N, 79.955 W Map
Discovery NotesSoil was damp, possibly freshly watered or could possibly be due to rain. It was very humid and about 77 degrees out at the time of collection.
Naming NotesIt was inspired by my suitemates.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 5, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2617
Genome length (bp)43833
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCCCGCGGTA
GC Content67.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDB
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesTurbid, distinct haloes around the center.
Number of Genes68
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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DirtyBoi_1
(terminase small subunit)

DirtyBoi_2
(terminase large subunit)

DirtyBoi_3
(portal protein)

DirtyBoi_4

DirtyBoi_5
(capsid maturation protease)

DirtyBoi_6
(scaffolding protein)

DirtyBoi_7
(major capsid protein)

DirtyBoi_8

DirtyBoi_9
(head-to-tail adaptor)

DirtyBoi_10
(head-to-tail stopper)

DirtyBoi_11

DirtyBoi_12
(tail terminator)

DirtyBoi_13
(major tail protein)

DirtyBoi_14

DirtyBoi_15
(tail assembly chaperone)

DirtyBoi_16
(tail assembly chaperone)

DirtyBoi_17

DirtyBoi_18
(tape measure protein)

DirtyBoi_19
(minor tail protein)

DirtyBoi_20
(minor tail protein)

DirtyBoi_21

DirtyBoi_22
(lysin A, protease C39 domain)

DirtyBoi_23
(lysin A, glycosyl hydrolase domain)

DirtyBoi_24
(holin)

DirtyBoi_25

DirtyBoi_26

DirtyBoi_27

DirtyBoi_28
(lysin B)

DirtyBoi_29
(minor tail protein)

DirtyBoi_30

DirtyBoi_31
(minor tail protein)

DirtyBoi_32
(esterase)

DirtyBoi_33

DirtyBoi_34
(ribbon-helix-helix DNA binding domain protein)

DirtyBoi_35

DirtyBoi_36
(BrnT-like antitoxin)

DirtyBoi_37
(BrnT-like toxin)

DirtyBoi_38

DirtyBoi_39

DirtyBoi_40
(tyrosine integrase)

DirtyBoi_41

DirtyBoi_42
(immunity repressor)

DirtyBoi_43
(helix-turn-helix DNA binding domain protein)

DirtyBoi_44

DirtyBoi_45
(ParB-like nuclease domain protein)

DirtyBoi_46

DirtyBoi_47

DirtyBoi_48

DirtyBoi_49

DirtyBoi_50

DirtyBoi_51

DirtyBoi_52

DirtyBoi_53
(ParB-like nuclease domain protein)

DirtyBoi_54

DirtyBoi_55
(FtsK-like DNA translocase)

DirtyBoi_56
(helix-turn-helix DNA binding domain protein)

DirtyBoi_57

DirtyBoi_58

DirtyBoi_59
(nucleotidyl transferase)

DirtyBoi_60

DirtyBoi_61
(HNH endonuclease)

DirtyBoi_62

DirtyBoi_63

DirtyBoi_64
(DNA polymerase III subunit)

DirtyBoi_65

DirtyBoi_66

DirtyBoi_67
(helix-turn-helix DNA binding domain protein)

DirtyBoi_68
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT771341
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 114
Pitt Freezer Box Grid# B3
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload