Gordonia phage DonkeyMan
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Detailed Information for Phage DonkeyMan
Discovery Information
Isolation HostGordonia terrae 3612
Found ByReed Seybolt
Year Found2021
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.444750 N, 79.952361 W Map
Discovery NotesFound when raining
Naming NotesRandomly thought of, our phage is lysogenic with a bullseye in the middle of it.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 24, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina MiSeq
Read TypeSingle-end reads
Read Length150 bp
Approximate Shotgun Coverage892
Genome length (bp)40111
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCCGGAGGTA
GC Content67.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDY
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionSaint Leo University
Annotation StatusIn GenBank
Plaque NotesHazy on the outside with a dark bullseye in the middle
Number of Genes61
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

DonkeyMan_1

DonkeyMan_2
(terminase)

DonkeyMan_3
(RNA binding protein)

DonkeyMan_4
(portal protein)

DonkeyMan_5
(capsid maturation protease)

DonkeyMan_6
(major capsid protein)

DonkeyMan_7

DonkeyMan_8
(head-to-tail adaptor)

DonkeyMan_9
(head-to-tail stopper)

DonkeyMan_10

DonkeyMan_11
(tail terminator)

DonkeyMan_12
(major tail protein)

DonkeyMan_13

DonkeyMan_14
(tail assembly chaperone)

DonkeyMan_15
(tail assembly chaperone)

DonkeyMan_16
(tape measure protein)

DonkeyMan_17
(minor tail protein)

DonkeyMan_18
(minor tail protein)

DonkeyMan_19

DonkeyMan_20
(lysin A, L-Ala-D-Glu peptidase domain)

DonkeyMan_21
(lysin A, glycosyl hydrolase domain)

DonkeyMan_22

DonkeyMan_23

DonkeyMan_24

DonkeyMan_25
(minor tail protein)

DonkeyMan_26
(minor tail protein)

DonkeyMan_27
(minor tail protein)

DonkeyMan_28

DonkeyMan_29
(oxidoreductase)

DonkeyMan_30

DonkeyMan_31
(tyrosine integrase)

DonkeyMan_32
(immunity repressor)

DonkeyMan_33
(helix-turn-helix DNA binding domain)

DonkeyMan_34

DonkeyMan_35

DonkeyMan_36
(WhiB family transcription factor)

DonkeyMan_37

DonkeyMan_38

DonkeyMan_39
(Cas4 family exonuclease)

DonkeyMan_40

DonkeyMan_41

DonkeyMan_42

DonkeyMan_43

DonkeyMan_44

DonkeyMan_45

DonkeyMan_46

DonkeyMan_47

DonkeyMan_48

DonkeyMan_49

DonkeyMan_50
(lysin B)

DonkeyMan_51

DonkeyMan_52

DonkeyMan_53
(helix-turn-helix DNA binding domain)

DonkeyMan_54
(DNA primase/polymerase)

DonkeyMan_55

DonkeyMan_56

DonkeyMan_57
(Holliday junction resolvase)

DonkeyMan_58

DonkeyMan_59
(helix-turn-helix DNA binding domain)

DonkeyMan_60

DonkeyMan_61
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPV940987
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 141
Pitt Freezer Box Grid# C5
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload