Detailed Information for Phage DonkeyMan |
Discovery Information |
Isolation Host | Gordonia terrae 3612 |
Found By | Reed Seybolt |
Year Found | 2021 |
Location Found | Pittsburgh, PA United States |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 30°C |
GPS Coordinates | 40.444750 N, 79.952361 W Map |
Discovery Notes | Found when raining |
Naming Notes | Randomly thought of, our phage is lysogenic with a bullseye in the middle of it. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 24, 2024 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Sequencer Used | Illumina MiSeq |
Read Type | Single-end reads |
Read Length | 150 bp |
Approximate Shotgun Coverage | 892 |
Genome length (bp) | 40111 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TCCGGAGGTA |
GC Content | 67.1% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | DY |
Subcluster | -- |
Cluster Life Cycle | Unknown |
Other Cluster Members |
|
Annotating Institution | Saint Leo University |
Annotation Status | In GenBank |
Plaque Notes | Hazy on the outside with a dark bullseye in the middle |
Number of Genes | 61 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | PV940987 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
141 |
Pitt Freezer Box Grid# |
C5 |
Available Files |
Plaque Picture | Download |
GenBank File for Phamerator | Download |