| Detailed Information for Phage Erk16 | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Emily R Konrad |
| Year Found | 2016 |
| Location Found | Oxford, OH USA |
| Finding Institution | Miami University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 37°C |
| GPS Coordinates | 39.502689 N, 84.732361 W Map |
| Discovery Notes | Oxford, OH Date sample was taken: 9-7-16 clay-like soil containing some organic matter (small pebbles, small pieces of mulch) taken from approx. 3 cm below surface |
| Naming Notes | initials, hs grad class |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 28, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 223 |
| Genome length (bp) | 64877 |
| Character of genome ends | Circularly Permuted |
| GC Content | 59.6% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | D |
| Subcluster | D1 |
| Cluster Life Cycle | Lytic |
| Lysogeny Notes | lytic |
| Other Cluster Members |
Click to View |
| Annotating Institution | Miami University |
| Annotation Status | In GenBank |
| Plaque Notes | approx. 2 mm plaque diameter; during initial rounds of purification, plaques had turbid halos; morphology changed from "starburst" margin to nearly perfectly circular |
| Morphotype | Siphoviridae |
| Number of Genes | 89 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewErk16_1 Erk16_2 Erk16_3 Erk16_4 Erk16_5 Erk16_6 Erk16_7 Erk16_8 Erk16_9 Erk16_10 Erk16_11 Erk16_12 Erk16_13 Erk16_14 Erk16_15 Erk16_16 Erk16_17 Erk16_18 Erk16_19 Erk16_20 Erk16_21 Erk16_22 Erk16_23 Erk16_24 Erk16_25 Erk16_26 Erk16_27 Erk16_28 Erk16_29 Erk16_30 Erk16_31 Erk16_32 Erk16_33 Erk16_34 Erk16_35 Erk16_36 Erk16_37 Erk16_38 Erk16_39 Erk16_40 Erk16_41 Erk16_42 Erk16_43 Erk16_44 Erk16_45 Erk16_46 Erk16_47 Erk16_48 Erk16_49 Erk16_50 Erk16_51 Erk16_52 Erk16_53 Erk16_54 Erk16_55 Erk16_56 Erk16_57 Erk16_58 Erk16_59 Erk16_60 Erk16_61 Erk16_62 Erk16_63 Erk16_64 Erk16_65 Erk16_66 Erk16_67 Erk16_68 Erk16_69 Erk16_70 Erk16_71 Erk16_72 Erk16_73 Erk16_74 Erk16_75 Erk16_76 Erk16_77 Erk16_78 Erk16_79 Erk16_80 Erk16_81 Erk16_82 Erk16_83 Erk16_84 Erk16_85 Erk16_86 Erk16_87 Erk16_88 Erk16_89 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MH316562 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| SEA Lysate Titer | 2.93 X 10^10 |
| Pitt Freezer Box# | 31 |
| Pitt Freezer Box Grid# | F8 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
