Detailed Information for Phage Eyes | |
Discovery Information | |
Isolation Host | Gordonia terrae 3612 |
Found By | Madison Hanaway |
Year Found | 2017 |
Location Found | Pittsburgh, PA USA |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | -8°C |
GPS Coordinates | 40.438889 N, 79.954722 W Map |
Discovery Notes | The ground was frozen solid. The soil sample was taken from the very surface layer of the ground next to a metal fence. |
Naming Notes | Phage Morphology looks like a cloudy iris with a clear pupil. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | May 18, 2017 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 1539 |
Genome length (bp) | 46772 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGCCGCGGTA |
GC Content | 67.1% |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | DB |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members | |
Annotating Institution | University of Pittsburgh |
Annotation Status | In GenBank |
Plaque Notes | Clear center with large cloudy area on the outside |
Morphotype | Siphoviridae |
Number of Genes | 65 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
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Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info | |
Uploaded to GenBank? | Yes |
GenBank Accession | MK061410 |
Refseq Number | None yet |
Archiving Info | |
Archiving status | Archived |
SEA Lysate Titer | 3.33x10^11 pfu/mL |
Date of SEA Lysate Titering | Feb 22, 2017 |
Pitt Freezer Box# | 55 |
Pitt Freezer Box Grid# | F7 |
Available Files | |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |