Streptomyces phage Gilson
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Detailed Information for Phage Gilson
Discovery Information
Isolation HostStreptomyces griseofuscus ATCC 23916
Found ByMorgan Batley and Nathan Soria
Year Found2017
Location FoundSt. Louis, MO USA
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature35°C
GPS Coordinates38.647 N, 90.311 W Map
Discovery NotesAir Temp: 95F in direct sun
Soil type: Dry organic
Depth: 2cm
On the side of a busy street
Naming NotesThe name of our phage is inspired by the micropipettes that sit on our lab bench.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 13, 2018
Sequencing FacilityThe McDonnell Genome Institute at Washington University
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage59
Genome length (bp)128338
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length766 bp
GC Content47.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBK
SubclusterBK1
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionWashington University in St. Louis
Annotation StatusIn GenBank
Plaque NotesPlaques were uniformly large, clear, and circular in shape.
MorphotypeSiphoviridae
Number of Genes231
Number of tRNAs35
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

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Gilson_1

Gilson_2

Gilson_3

Gilson_4

Gilson_5

Gilson_6

Gilson_7
(DNA methyltransferase)

Gilson_8
(ThyX-like thymidylate synthase)

Gilson_9
(LAGLIDADG endonuclease)

Gilson_10

Gilson_11

Gilson_12

Gilson_13

Gilson_14

Gilson_15
(VbhA-like antitoxin)

Gilson_16 — tRNA
(codon recognized: ACC)

Gilson_17 — tRNA
(codon recognized: ACG)

Gilson_18 — tRNA
(codon recognized: ACA)

Gilson_19 — tRNA
(codon recognized: AUC)

Gilson_20

Gilson_21
(hydrolase)

Gilson_22
(glycosyltransferase)

Gilson_23
(glycosyltransferase)

Gilson_24
(ribonucleotide reductase)

Gilson_25
(LysM-like endolysin)

Gilson_26

Gilson_27

Gilson_28
(portal protein)

Gilson_29

Gilson_30
(capsid maturation protease)

Gilson_31
(major capsid protein)

Gilson_32

Gilson_33
(head-to-tail connector complex protein)

Gilson_34

Gilson_35

Gilson_36

Gilson_37

Gilson_38
(tail assembly chaperone)

Gilson_39
(tail assembly chaperone)

Gilson_40
(tape measure protein)

Gilson_41
(minor tail protein)

Gilson_42
(minor tail protein)

Gilson_43

Gilson_44
(minor tail protein)

Gilson_45
(minor tail protein)

Gilson_46

Gilson_47

Gilson_48

Gilson_49
(HNH endonuclease)

Gilson_50
(phosphoesterase)

Gilson_51

Gilson_52

Gilson_53

Gilson_54

Gilson_55

Gilson_56
(DNA helicase)

Gilson_57

Gilson_58
(DNA primase)

Gilson_59
(ssDNA binding protein)

Gilson_60
(HNH endonuclease)

Gilson_61
(DnaE-like DNA polymerase III)

Gilson_62

Gilson_63
(MazG-like nucleotide pyrophosphohydrolase)

Gilson_64

Gilson_65
(RecA-like DNA recombinase)

Gilson_66

Gilson_67

Gilson_68
(PnuC-like nicotinamide riboside transporter)

Gilson_69
(Holliday junction resolvase)

Gilson_70

Gilson_71

Gilson_72
(exonuclease)

Gilson_73

Gilson_74
(RuvC-like resolvase)

Gilson_75

Gilson_76
(DprA-like ssDNA binding protein)

Gilson_77
(helix-turn-helix DNA-binding domain protein)

Gilson_78
(glycosyltransferase)

Gilson_79
(glycosyltransferase)

Gilson_80
(nucleotidyltransferase)

Gilson_81

Gilson_82
(DnaQ-like exonuclease)

Gilson_83
(deoxynucleoside monophosphate kinase)

Gilson_84
(phosphatase)

Gilson_85

Gilson_86

Gilson_87

Gilson_88

Gilson_89
(terminase)

Gilson_90

Gilson_91

Gilson_92 — tRNA
(codon recognized: CCA)

Gilson_93 — tRNA
(codon recognized: CCA)

Gilson_94
(HNH endonuclease)

Gilson_95

Gilson_96 — tRNA
(codon recognized: CAG)

Gilson_97 — tRNA
(codon recognized: UGG)

Gilson_98

Gilson_99 — tRNA
(codon recognized: AUC)

Gilson_100 — tRNA
(codon recognized: UCA)

Gilson_101

Gilson_102 — tRNA
(codon recognized: GAC)

Gilson_103

Gilson_104

Gilson_105

Gilson_106
(Ro-like RNA binding protein)

Gilson_107

Gilson_108

Gilson_109 — tRNA
(codon recognized: CGC)

Gilson_110

Gilson_111
(DnaQ-like DNA polymerase III subunit)

Gilson_112

Gilson_113

Gilson_114 — tRNA
(codon recognized: GCA)

Gilson_115

Gilson_117 — tRNA
(codon recognized: AAG)

Gilson_118

Gilson_119 — tRNA
(codon recognized: AUG)

Gilson_120 — tRNA
(codon recognized: AUG)

Gilson_121 — tRNA
(codon recognized: UUC)

Gilson_122

Gilson_123

Gilson_124

Gilson_125

Gilson_126 — tRNA
(codon recognized: UAC)

Gilson_127 — tRNA
(codon recognized: CAC)

Gilson_128 — tRNA
(codon recognized: UGC)

Gilson_129 — tRNA
(codon recognized: AAC)

Gilson_130

Gilson_131 — tRNA
(codon recognized: CGA)

Gilson_132

Gilson_133

Gilson_134 — tRNA
(codon recognized: AGG)

Gilson_135

Gilson_136 — tmRNA

Gilson_137

Gilson_138
(band-7-like membrane protein)

Gilson_139

Gilson_140

Gilson_141

Gilson_142

Gilson_143

Gilson_144 — tRNA
(codon recognized: CUC)

Gilson_145

Gilson_146

Gilson_147

Gilson_148 — tRNA
(codon recognized: AGC)

Gilson_149

Gilson_150

Gilson_151
(RNA ligase)

Gilson_152

Gilson_153
(polynucleotide kinase)

Gilson_154

Gilson_155

Gilson_156 — tRNA
(codon recognized: CUA)

Gilson_157

Gilson_158

Gilson_159

Gilson_160

Gilson_161 — tRNA
(codon recognized: GUA)

Gilson_162 — tRNA
(codon recognized: UUG)

Gilson_163

Gilson_164

Gilson_165

Gilson_166

Gilson_167

Gilson_168

Gilson_169

Gilson_170
(rIIB-like protein)

Gilson_171

Gilson_172
(phosphoesterase)

Gilson_173

Gilson_174

Gilson_175 — tRNA
(codon recognized: AAA)

Gilson_176

Gilson_177
(WhiB family transcription factor)

Gilson_178

Gilson_179

Gilson_180

Gilson_181 — tRNA
(codon recognized: AUA)

Gilson_182

Gilson_183

Gilson_184

Gilson_185 — tRNA
(codon recognized: GAG)

Gilson_186 — tRNA
(codon recognized: GAA)

Gilson_187

Gilson_188 — tRNA
(codon recognized: GGC)

Gilson_189

Gilson_190 — tRNA
(codon recognized: GGA)

Gilson_191

Gilson_192 — tRNA
(codon recognized: CAA)

Gilson_193

Gilson_194

Gilson_195

Gilson_196

Gilson_197

Gilson_198

Gilson_199

Gilson_200

Gilson_201
(thioredoxin)

Gilson_202

Gilson_203

Gilson_204

Gilson_205

Gilson_206

Gilson_207
(RNA ligase)

Gilson_208

Gilson_209

Gilson_210

Gilson_211

Gilson_212

Gilson_213

Gilson_214

Gilson_215

Gilson_216
(Lsr2-like DNA bridging protein)

Gilson_217

Gilson_218

Gilson_219

Gilson_220

Gilson_221

Gilson_222

Gilson_223
(HNH endonuclease)

Gilson_224

Gilson_225

Gilson_226

Gilson_227
(hydrolase)

Gilson_228

Gilson_229

Gilson_230

Gilson_231

Gilson_232

Gilson_233

Gilson_234

Gilson_235

Gilson_236

Gilson_237
(HNH endonuclease)

Gilson_238
(phosphoesterase)

Gilson_239

Gilson_240
(SprT-like protease)

Gilson_241

Gilson_242

Gilson_243

Gilson_244

Gilson_245

Gilson_246

Gilson_247

Gilson_248

Gilson_249

Gilson_250

Gilson_251

Gilson_252

Gilson_253

Gilson_254

Gilson_255

Gilson_256

Gilson_257

Gilson_258

Gilson_259

Gilson_260

Gilson_261

Gilson_262

Gilson_263

Gilson_264

Gilson_265

Gilson_266

Gilson_267

Gilson_268

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK061412
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 5.11x10^10
Pitt Freezer Box# 49
Pitt Freezer Box Grid# C8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload