Microbacterium phage Gingerbug
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Detailed Information for Phage Gingerbug
Discovery Information
Isolation HostMicrobacterium foliorum NRRL B-24224
Found ByHope Poet
Year Found2021
Location FoundNewport, OR United States
Finding InstitutionOregon Coast Community College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates44.60271 N, 124.04604 W Map
Discovery NotesI found my soil sample on 10/19/21 at 11:50 am from a flower bed located on the grounds of the college. The soil was very damp and of good quality.
Naming NotesI named mine gingerbug to represent a piece of me. I have bright red hair and people like to call me ginger!
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 17, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1343
Genome length (bp)39721
Character of genome endsCircularly Permuted
GC Content69.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterGF
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members

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Annotating InstitutionOregon Coast Community College
Annotation StatusIn GenBank
Plaque NotesPlaque morphology consists of small and medium-sized clearings with a few cloudy ones.
Has been Phamerated?Yes
Gene List

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Gingerbug_1
(helix-turn-helix DNA binding domain)

Gingerbug_2

Gingerbug_3

Gingerbug_4

Gingerbug_5
(terminase)

Gingerbug_6
(portal protein)

Gingerbug_7
(minor capsid protein)

Gingerbug_8
(scaffolding protein)

Gingerbug_9
(major capsid protein)

Gingerbug_10

Gingerbug_11
(head-to-tail adaptor)

Gingerbug_12
(head-to-tail stopper)

Gingerbug_13
(minor capsid protein)

Gingerbug_14
(tail terminator)

Gingerbug_15
(major tail protein)

Gingerbug_16
(tail assembly chaperone)

Gingerbug_17
(tail assembly chaperone)

Gingerbug_18
(tape measure protein)

Gingerbug_19
(minor tail protein)

Gingerbug_20
(minor tail protein)

Gingerbug_21

Gingerbug_22
(minor tail protein)

Gingerbug_23
(minor tail protein)

Gingerbug_24

Gingerbug_25

Gingerbug_26
(endolysin)

Gingerbug_27

Gingerbug_28

Gingerbug_29
(holin)

Gingerbug_30

Gingerbug_31
(HNH endonuclease)

Gingerbug_32

Gingerbug_33

Gingerbug_34

Gingerbug_35
(winged helix-turn-helix DNA binding domain)

Gingerbug_36

Gingerbug_37

Gingerbug_38

Gingerbug_39

Gingerbug_40
(helix-turn-helix DNA binding domain)

Gingerbug_41
(RusA-like resolvase (endonuclease))

Gingerbug_42
(DNA binding protein)

Gingerbug_43
(helicase loader)

Gingerbug_44
(helix-turn-helix DNA binding domain)

Gingerbug_45

Gingerbug_46

Gingerbug_47

Gingerbug_48

Gingerbug_49
(exonuclease)

Gingerbug_50
(ssDNA binding protein)

Gingerbug_51

Gingerbug_52

Gingerbug_53

Gingerbug_54

Gingerbug_55

Gingerbug_56
(DNA polymerase III sliding clamp (Beta))

Gingerbug_57
(HNH endonuclease)

Gingerbug_58

Gingerbug_59

Gingerbug_60
(ParB-like nuclease domain)

Gingerbug_61

Gingerbug_62

Gingerbug_63

Gingerbug_64

Gingerbug_65

Gingerbug_66

Gingerbug_67

Gingerbug_68

Gingerbug_69

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionON970592
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 143
Pitt Freezer Box Grid# A12
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload