Gordonia phage Hibiscus
Hibiscus Plaque Picture
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Detailed Information for Phage Hibiscus
Discovery Information
Isolation HostGordonia terrae 3612
Found ByCampbell Gwin and Jaydep Halder
Year Found2021
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.441944 N, 79.950268 W Map
Naming NotesWe like hibiscus flowers.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 1, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage877
Genome length (bp)39902
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCCGGAGGTA
GC Content67.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDY
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotating InstitutionUniversity of Mary
Annotation StatusIn GenBank
Plaque NotesCircular and clear. No other plaques near it.
Number of Genes63
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Hibiscus_1

Hibiscus_2
(terminase)

Hibiscus_3
(RNA binding protein)

Hibiscus_4
(portal protein)

Hibiscus_5
(capsid maturation protease)

Hibiscus_6
(major capsid protein)

Hibiscus_7

Hibiscus_8
(head-to-tail adaptor)

Hibiscus_9
(head-to-tail stopper)

Hibiscus_10

Hibiscus_11
(tail terminator)

Hibiscus_12
(major tail protein)

Hibiscus_13

Hibiscus_14
(tail assembly chaperone)

Hibiscus_15
(tail assembly chaperone)

Hibiscus_16
(tape measure protein)

Hibiscus_17
(minor tail protein)

Hibiscus_18
(minor tail protein)

Hibiscus_19

Hibiscus_20
(lysin A, L-Ala-D-Glu peptidase domain)

Hibiscus_21
(lysin A, glycosyl hydrolase domain)

Hibiscus_22

Hibiscus_23

Hibiscus_24

Hibiscus_25
(minor tail protein)

Hibiscus_26

Hibiscus_27

Hibiscus_28

Hibiscus_29

Hibiscus_30
(minor tail protein)

Hibiscus_31

Hibiscus_32
(tyrosine integrase)

Hibiscus_33
(immunity repressor)

Hibiscus_34
(excise)

Hibiscus_35

Hibiscus_36

Hibiscus_37
(WhiB family transcription factor)

Hibiscus_38

Hibiscus_39

Hibiscus_40
(Cas4 exonuclease)

Hibiscus_41
(DNA binding protein)

Hibiscus_42

Hibiscus_43

Hibiscus_44

Hibiscus_45

Hibiscus_46

Hibiscus_47

Hibiscus_48

Hibiscus_49

Hibiscus_50
(lysin B)

Hibiscus_51
(helix-turn-helix DNA binding domain protein)

Hibiscus_52

Hibiscus_53

Hibiscus_54
(DNA primase/polymerase)

Hibiscus_55

Hibiscus_56

Hibiscus_57
(Holliday junction resolvase)

Hibiscus_58

Hibiscus_59
(helix-turn-helix DNA binding domain protein)

Hibiscus_60

Hibiscus_61
(HicA-like toxin)

Hibiscus_62
(HicB-like antitoxin)

Hibiscus_63
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPP208934
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 141
Pitt Freezer Box Grid# E3
Available Files
GenBank File for PhameratorDownload