Gordonia phage Huffy
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Detailed Information for Phage Huffy
Discovery Information
Isolation HostGordonia terrae 3612
Found ByLeon Lin
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.446694 N, 79.953711 W Map
Discovery NotesFound in a flower bed nearby Langley Hall on UPitt campus
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJul 25, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2002
Genome length (bp)44936
Character of genome ends3' Sticky Overhang
Overhang Length12 bases
Overhang SequenceTCCGGGCCGGTA
GC Content66.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCU
SubclusterCU1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque Notesclear,about 1mm in diameter
MorphotypeSiphoviridae
Number of Genes82
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Huffy_1

Huffy_2

Huffy_3

Huffy_4

Huffy_5

Huffy_6

Huffy_7
(serine hydrolase)

Huffy_8
(terminase small subunit)

Huffy_9
(terminase large subunit)

Huffy_10
(portal protein)

Huffy_11
(capsid maturation protease)

Huffy_12
(major capsid protein)

Huffy_13

Huffy_14
(head-to-tail adaptor)

Huffy_15
(head-to-tail stopper)

Huffy_16

Huffy_17

Huffy_18
(tail terminator)

Huffy_19
(major tail protein)

Huffy_20
(tail assembly chaperone)

Huffy_21
(tail assembly chaperone)

Huffy_22
(tape measure protein)

Huffy_23
(minor tail protein)

Huffy_24
(minor tail protein)

Huffy_25
(lysin A)

Huffy_26

Huffy_27

Huffy_28
(minor tail protein)

Huffy_29
(minor tail protein)

Huffy_30

Huffy_31
(minor tail protein)

Huffy_32

Huffy_33
(helix-turn-helix DNA binding protein)

Huffy_34

Huffy_35

Huffy_36

Huffy_37

Huffy_38
(tyrosine integrase)

Huffy_39

Huffy_40
(immunity repressor)

Huffy_41
(Cro protein)

Huffy_42
(ssDNA binding protein)

Huffy_43

Huffy_44

Huffy_45

Huffy_46
(Cas4 family exonuclease)

Huffy_47

Huffy_48
(helix-turn-helix DNA binding protein)

Huffy_49
(ssDNA binding protein, ERF family)

Huffy_50

Huffy_51

Huffy_52
(HNH endonuclease)

Huffy_53

Huffy_54
(DnaB-like dsDNA helicase)

Huffy_55
(ssDNA binding protein)

Huffy_56

Huffy_57
(RusA-like resolvase)

Huffy_58

Huffy_59

Huffy_60

Huffy_61
(helix-turn-helix DNA binding protein)

Huffy_62

Huffy_63
(NrdH-like glutaredoxin)

Huffy_64

Huffy_65

Huffy_66
(CobT-like cobalamin biosynthesis protein)

Huffy_67

Huffy_68

Huffy_69

Huffy_70
(nucleoside deoxyribosyltransferase)

Huffy_71

Huffy_72

Huffy_73

Huffy_74

Huffy_75

Huffy_76

Huffy_77

Huffy_78

Huffy_79

Huffy_80

Huffy_81

Huffy_82

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKY471268
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 5
Pitt Freezer Box Grid# C6
Available Files
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload