| Detailed Information for Phage Jojo24 | |
| Discovery Information | |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Yufeng |
| Year Found | 2018 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 4°C |
| GPS Coordinates | 40.443298 N, 79.953489 W Map |
| Discovery Notes | The sample was collected from a 300 ft ground with grass on it at a cloudy night. The collection location - near the Bigelow Blvd, and the time - 8:13 PM on 8/29/2018. |
| Naming Notes | Form an anime called Jojo. Looking forward more research and hopefully name the next one HYB, after an awesome anime painter. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 25, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 1887 |
| Genome length (bp) | 40579 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | TCCGGAGGTA |
| GC Content | 67.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | DY |
| Subcluster | -- |
| Cluster Life Cycle | Unknown |
| Other Cluster Members | |
| Annotating Institution | Washington State University |
| Annotation Status | In GenBank |
| Plaque Notes | Jojo24 is a mixed morphology phage with plaques ranging from 1-3 mm in size. They appear clear, pointing to a lytic life cycle. Jojo24 has a long tail that measures approximately 200 nm and a round head that measures 50 nm in diameter, classifying it as a myoviridae |
| Morphotype | Siphoviridae |
| Number of Genes | 63 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewJojo24_1 Jojo24_2 Jojo24_3 Jojo24_4 Jojo24_5 Jojo24_6 Jojo24_7 Jojo24_8 Jojo24_9 Jojo24_10 Jojo24_11 Jojo24_12 Jojo24_13 Jojo24_14 Jojo24_15 Jojo24_16 Jojo24_17 Jojo24_18 Jojo24_19 Jojo24_20 Jojo24_21 Jojo24_22 Jojo24_23 Jojo24_24 Jojo24_25 Jojo24_26 Jojo24_27 Jojo24_28 Jojo24_29 Jojo24_30 Jojo24_31 Jojo24_32 Jojo24_33 Jojo24_34 Jojo24_35 Jojo24_36 Jojo24_37 Jojo24_38 Jojo24_39 Jojo24_40 Jojo24_41 Jojo24_42 Jojo24_43 Jojo24_44 Jojo24_45 Jojo24_46 Jojo24_47 Jojo24_48 Jojo24_49 Jojo24_50 Jojo24_51 Jojo24_52 Jojo24_53 Jojo24_54 Jojo24_55 Jojo24_56 Jojo24_57 Jojo24_58 Jojo24_59 Jojo24_60 Jojo24_61 Jojo24_62 Jojo24_63 |
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MZ209302 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 90 |
| Pitt Freezer Box Grid# | D3 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |