Microbacterium phage LeeroyJenkins
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Detailed Information for Phage LeeroyJenkins
Discovery Information
Isolation HostMicrobacterium paraoxydans NRRL B-14843
Found ByJacob Kinneman, Joe Alexander
Year Found2018
Location FoundHudson, WI USA
Finding InstitutionUniversity of Wisconsin-River Falls
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature28°C
GPS Coordinates44.98444 N, 92.7544 W Map
Discovery NotesDr. Klyczek Compost soil sample.

Compost pile next to garage in alley. Partially degraded leaves and kitchen scraps.

Soil was moist with partially decomposed leaves, grass, and vegetables.

Weather was sunny, clear, and no breeze.
Naming NotesRandom thought
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 18, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2051
Genome length (bp)62439
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length1807 bp
End Determination NotesReads and draft sequence were run through PAUSE. There was a clear double-coverage region, and the right side of it had a well-defined end with a large buildup of reads. The left end, however, did not a have a clear single base where it ended, so the left end was chosen based on the approximate spot where the coverage dropped off.
GC Content58.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterGB
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members

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Annotating InstitutionUniversity of Wisconsin-River Falls
Annotation StatusIn GenBank
Plaque NotesSmall, clear, no halo, and uniform
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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LeeroyJenkins_1

LeeroyJenkins_2
(DnaJ-like chaperonin)

LeeroyJenkins_3

LeeroyJenkins_4

LeeroyJenkins_5
(membrane protein)

LeeroyJenkins_6

LeeroyJenkins_7

LeeroyJenkins_8

LeeroyJenkins_9

LeeroyJenkins_10

LeeroyJenkins_11

LeeroyJenkins_12
(membrane protein)

LeeroyJenkins_13
(membrane protein)

LeeroyJenkins_14
(membrane protein)

LeeroyJenkins_15

LeeroyJenkins_16
(protease)

LeeroyJenkins_17

LeeroyJenkins_18

LeeroyJenkins_19

LeeroyJenkins_20

LeeroyJenkins_21

LeeroyJenkins_22

LeeroyJenkins_23
(terminase)

LeeroyJenkins_24
(portal protein)

LeeroyJenkins_25
(capsid maturation protease)

LeeroyJenkins_26

LeeroyJenkins_27
(major capsid protein)

LeeroyJenkins_28
(G-I-Y Y-I-G endonuclease)

LeeroyJenkins_29
(minor tail protein)

LeeroyJenkins_30

LeeroyJenkins_31

LeeroyJenkins_32
(glycosyl hydrolase)

LeeroyJenkins_33
(hydrolase)

LeeroyJenkins_34

LeeroyJenkins_35

LeeroyJenkins_36

LeeroyJenkins_37

LeeroyJenkins_38

LeeroyJenkins_39

LeeroyJenkins_40
(major tail protein)

LeeroyJenkins_41
(HNH endonuclease)

LeeroyJenkins_42
(tail assembly chaperone)

LeeroyJenkins_43
(tail assembly chaperone)

LeeroyJenkins_44
(tape measure protein)

LeeroyJenkins_45
(minor tail protein)

LeeroyJenkins_46
(minor tail protein)

LeeroyJenkins_47
(minor tail protein)

LeeroyJenkins_48

LeeroyJenkins_49

LeeroyJenkins_50
(lysin A)

LeeroyJenkins_51

LeeroyJenkins_52
(exonuclease)

LeeroyJenkins_53

LeeroyJenkins_54
(NrdH-like glutaredoxin)

LeeroyJenkins_55

LeeroyJenkins_56

LeeroyJenkins_57

LeeroyJenkins_58

LeeroyJenkins_59

LeeroyJenkins_60

LeeroyJenkins_61
(RuvC-like resolvase)

LeeroyJenkins_62

LeeroyJenkins_63

LeeroyJenkins_64

LeeroyJenkins_65

LeeroyJenkins_66

LeeroyJenkins_67

LeeroyJenkins_68
(DNA polymerase I)

LeeroyJenkins_69

LeeroyJenkins_70
(acetyltransferase)

LeeroyJenkins_71
(helix-turn-helix DNA binding domain protein)

LeeroyJenkins_72

LeeroyJenkins_73
(DNA primase)

LeeroyJenkins_75

LeeroyJenkins_76
(ssDNA binding protein)

LeeroyJenkins_77

LeeroyJenkins_78

LeeroyJenkins_79
(Cas4 family exonuclease)

LeeroyJenkins_80

LeeroyJenkins_81

LeeroyJenkins_82

LeeroyJenkins_83
(ERF family ssDNA binding protein)

LeeroyJenkins_84

LeeroyJenkins_85
(DnaQ-like DNA polymerase III subunit)

LeeroyJenkins_86

LeeroyJenkins_87

LeeroyJenkins_88

LeeroyJenkins_89

LeeroyJenkins_90

LeeroyJenkins_91
(WhiB family transcription factor)

LeeroyJenkins_92

LeeroyJenkins_93

LeeroyJenkins_94
(HNH endonuclease)

LeeroyJenkins_95
(helicase)

LeeroyJenkins_96

LeeroyJenkins_97

LeeroyJenkins_98

LeeroyJenkins_99
(membrane protein)

LeeroyJenkins_100

LeeroyJenkins_101

LeeroyJenkins_102
(membrane protein)

LeeroyJenkins_103

LeeroyJenkins_104

LeeroyJenkins_105

LeeroyJenkins_106

LeeroyJenkins_107

LeeroyJenkins_108

LeeroyJenkins_109

LeeroyJenkins_110

LeeroyJenkins_111

LeeroyJenkins_112

LeeroyJenkins_113

LeeroyJenkins_114
(HNH endonuclease)

LeeroyJenkins_115

LeeroyJenkins_116

LeeroyJenkins_117

LeeroyJenkins_118

LeeroyJenkins_119

LeeroyJenkins_120

LeeroyJenkins_121

LeeroyJenkins_122

LeeroyJenkins_123

LeeroyJenkins_124

LeeroyJenkins_125

LeeroyJenkins_126

LeeroyJenkins_127

LeeroyJenkins_128
(DnaJ-like chaperonin)

LeeroyJenkins_129

LeeroyJenkins_130

LeeroyJenkins_131
(membrane protein)

LeeroyJenkins_132

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN096358
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 87
Pitt Freezer Box Grid# H3
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload