| Detailed Information for Phage LilyPad |
| Discovery Information |
| Isolation Host | Gordonia rubripertincta NRRL B-16540 |
| Found By | Casia Esparza |
| Year Found | 2021 |
| Location Found | Socorro, NM USA |
| Finding Institution | New Mexico Institute of Mining and Technology |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 31°C |
| GPS Coordinates | 34.06 N, 106.91 W Map |
| Discovery Notes | The soil was taken from a small pond bank near a golf course. |
| Naming Notes | The phage was isolated from pond bank soil near lily pads |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 25, 2022 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1160 |
| Genome length (bp) | 64158 |
| Character of genome ends | Circularly Permuted |
| GC Content | 59.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | DG |
| Subcluster | DG1 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | New Mexico Institute of Mining and Technology |
| Annotation Status | In GenBank |
| Plaque Notes | The plaques are small and pin-prick-like. They are clear, allowing for light to shine through when held up to a light. |
| Morphotype | Siphoviridae |
| Number of Genes | 90 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | ON970620 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
136 |
| Pitt Freezer Box Grid# |
F5 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
